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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0522800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Armadillo-like helical domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.35 (0.0192) R2 : 0.312
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 5.1 (0.362) R2dE : 0.299 R2E : 0.3
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.103 (0.0405) R2dN8 : 0.0126 R2N8 : 0.0127
σ : 0.361
deviance : 60.09
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_____
C
peak time of C : --
E
wheather : atmosphere
threshold : 997.8
memory length : 24
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 9.28
open length of G : 1.53

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
58.14 0.358 3.38 -0.161 0.181 22.7 0.0624 -102 -0.0967 7.9 997.7 16 8.54 1.47
58.25 0.358 3.34 0.0762 0.179 4.96 0.048 -- -0.0961 7.84 997.7 16 8.54 1.47
58.15 0.358 3.24 0.688 0.182 -37 -- 244 -0.0969 7.72 997.7 16 8.54 1.47
58.15 0.355 3.34 0.0786 0.182 5.01 -- -- -0.097 7.72 997.8 20 8.19 1.9
59.92 0.362 3.19 1.02 -- -54.6 -- 346 -0.094 -- 997.9 17 8.51 1.58
83.06 0.427 3.34 0.102 0.215 -- 0.271 -- -0.108 8.63 -- -- -- --
83.25 0.427 3.34 0.109 0.22 -- -- -- -0.109 8.1 -- -- -- --
59.92 0.361 3.35 0.0801 -- 5.08 -- -- -0.094 -- 997.8 24 8.71 2.28
58.31 0.356 3.34 -- 0.182 5.02 -- -- -0.106 7.68 997.8 33 9.28 0.836
85.9 0.433 3.35 0.111 -- -- -- -- -0.106 -- -- -- -- --
83.56 0.428 3.35 -- 0.22 -- -- -- -0.121 8.07 -- -- -- --
60.09 0.361 3.35 -- -- 5.1 -- -- -0.103 -- 997.8 24 9.28 1.53
86.22 0.433 3.35 -- -- -- -- -- -0.119 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 64.81 atmosphere 1000 30 < th dose dependent rect. 8 2
16 68.19 atmosphere 1000 270 < th dose dependent rect. 6 4
35 70.36 atmosphere 1000 10 < th dose independent rect. 8 2
41 70.47 atmosphere 1000 90 < th dose independent rect. 8 1
59 71.49 atmosphere 1000 10 < th dose dependent rect. 6 5
165 74.24 atmosphere 995 1440 > th dose independent rect. 3 12
185 74.54 atmosphere 1000 30 > th dose independent rect. 3 23
194 74.71 atmosphere 995 1440 > th dose independent rect. 3 14
197 74.74 atmosphere 1000 720 < th dose dependent sin 7 NA
221 75.05 atmosphere 1000 10 < th dose independent rect. 6 5
298 75.50 atmosphere 1000 720 > th dose independent rect. 3 8
349 75.85 wind 3 30 > th dose independent rect. 9 1
354 75.88 temperature 25 720 > th dose dependent rect. 2 6
377 76.06 atmosphere 1000 270 < th dose dependent sin 3 NA
394 76.20 atmosphere 995 1440 > th dose independent rect. 20 21
398 76.22 temperature 25 270 > th dose dependent rect. 5 2
403 76.24 atmosphere 995 1440 > th dose independent rect. 13 20
405 76.25 humidity 90 1440 < th dose independent rect. 1 3
416 76.30 atmosphere 995 1440 > th dose independent rect. 13 18
431 76.38 atmosphere 995 1440 > th dose independent sin 3 NA
433 76.38 humidity 90 1440 < th dose independent rect. 2 1
445 76.43 temperature 25 4320 > th dose dependent rect. 3 1
451 76.46 atmosphere 995 1440 > th dose independent sin 13 NA
452 76.46 humidity 90 1440 > th dose independent rect. 2 1
476 76.53 atmosphere 1005 90 > th dose dependent rect. 2 1
482 76.54 temperature 25 270 > th dose independent rect. 6 1
489 76.56 wind 1 10 < th dose independent rect. 22 1
491 76.56 atmosphere 1000 720 > th dose independent rect. 21 14
492 76.56 wind 1 10 < th dose dependent rect. 22 1
497 76.59 humidity 80 30 < th dose independent rect. 9 1
499 76.60 atmosphere 995 1440 > th dose independent rect. 12 23
511 76.63 wind 1 10 > th dose dependent rect. 9 1
541 76.70 atmosphere 995 1440 > th dose independent rect. 16 14
547 76.71 atmosphere 1005 10 > th dose dependent rect. 2 2
551 76.72 atmosphere 1000 720 > th dose independent rect. 23 10
566 76.77 atmosphere 1000 1440 < th dose dependent rect. 24 1
583 76.82 atmosphere 995 1440 > th dose independent rect. 16 17
598 76.86 atmosphere 995 1440 > th dose independent rect. 3 21
600 76.86 atmosphere 995 1440 > th dose independent rect. 10 23
601 76.86 atmosphere 995 1440 > th dose independent rect. 16 23
634 76.93 atmosphere 1000 10 < th dose dependent sin 2 NA
646 76.95 wind 1 10 < th dose dependent rect. 14 9
651 76.98 humidity 80 1440 > th dose independent rect. 24 1
658 76.99 wind 5 10 > th dose independent rect. 1 9
661 76.99 atmosphere 995 1440 > th dose independent rect. 8 23
674 77.00 atmosphere 995 1440 < th dose independent rect. 14 1
718 77.00 atmosphere 995 1440 < th dose dependent rect. 14 1
778 77.03 atmosphere 1000 720 < th dose independent rect. 22 12
787 77.04 atmosphere 995 1440 < th dose independent sin 6 NA
798 77.05 wind 3 10 > th dose dependent rect. 5 5
855 77.10 wind 1 14400 < th dose independent rect. 4 4
881 77.11 atmosphere 995 1440 < th dose independent sin 1 NA
924 77.12 atmosphere 995 1440 < th dose dependent sin 1 NA
931 77.13 atmosphere 995 1440 > th dose independent no NA NA
932 77.13 atmosphere 995 1440 < th dose independent sin 22 NA
937 77.13 atmosphere 995 1440 < th dose dependent sin 23 NA
960 77.14 atmosphere 995 1440 < th dose independent sin 20 NA
962 77.14 atmosphere 995 1440 < th dose independent no NA NA
965 77.14 wind 1 14400 < th dose independent rect. 2 6