Os01g0522400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os01g0522400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 109.02 | 0.491 | 3.19 | -0.196 | 0.0117 | 0.0407 | -0.432 | -1.81 | 0.146 | 15.3 | 23.29 | 1323 | -- | -- |
| 114.88 | 0.499 | 3.17 | -0.00308 | 0.0288 | -0.119 | -0.285 | -- | 0.229 | 15.2 | 19.85 | 2403 | -- | -- |
| 109.43 | 0.487 | 3.19 | -0.181 | 0.0583 | 0.0588 | -- | -1.68 | 0.14 | 10.1 | 24.77 | 1323 | -- | -- |
| 108.68 | 0.486 | 3.15 | -0.0317 | 0.152 | 0.661 | -- | -- | 0.244 | 10.6 | 57.63 | 1220 | -- | -- |
| 109.61 | 0.488 | 3.19 | -0.198 | -- | 0.0411 | -- | -1.75 | 0.146 | -- | 23.66 | 1323 | -- | -- |
| 115.35 | 0.504 | 3.17 | 0.013 | 0.0227 | -- | 0.347 | -- | 0.221 | 5.74 | -- | -- | -- | -- |
| 115.45 | 0.503 | 3.17 | 0.0167 | 0.0617 | -- | -- | -- | 0.22 | 10.1 | -- | -- | -- | -- |
| 106.27 | 0.48 | 3.15 | 0.244 | -- | 0.917 | -- | -- | 0.297 | -- | 59.18 | 1451 | -- | -- |
| 107.75 | 0.483 | 3.16 | -- | 0.077 | 0.824 | -- | -- | 0.249 | 10.4 | 58.54 | 1266 | -- | -- |
| 115.68 | 0.503 | 3.17 | 0.0159 | -- | -- | -- | -- | 0.22 | -- | -- | -- | -- | -- |
| 115.46 | 0.503 | 3.17 | -- | 0.0616 | -- | -- | -- | 0.218 | 10.1 | -- | -- | -- | -- |
| 107.73 | 0.483 | 3.15 | -- | -- | 0.851 | -- | -- | 0.289 | -- | 59.6 | 1445 | -- | -- |
| 115.69 | 0.502 | 3.17 | -- | -- | -- | -- | -- | 0.218 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 104.27 | humidity | 90 | 14400 | < th | dose independent | rect. | 21 | 2 |
| 2 | 104.35 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 2 |
| 6 | 104.67 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 1 |
| 7 | 104.67 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 3 |
| 25 | 105.31 | humidity | 90 | 14400 | < th | dose independent | rect. | 18 | 7 |
| 82 | 105.88 | humidity | 90 | 14400 | > th | dose independent | sin | 14 | NA |
| 83 | 105.88 | humidity | 90 | 14400 | < th | dose independent | rect. | 17 | 15 |
| 98 | 105.93 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 14 |
| 107 | 105.96 | humidity | 90 | 14400 | < th | dose independent | sin | 14 | NA |
| 190 | 106.16 | humidity | 90 | 14400 | > th | dose dependent | sin | 15 | NA |
| 215 | 106.22 | humidity | 80 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 286 | 106.37 | radiation | 30 | 720 | < th | dose independent | rect. | 15 | 8 |
| 366 | 106.50 | humidity | 90 | 14400 | > th | dose dependent | rect. | 15 | 17 |
| 413 | 106.58 | humidity | 90 | 14400 | < th | dose independent | rect. | 7 | 20 |
| 437 | 106.60 | humidity | 90 | 14400 | > th | dose independent | rect. | 7 | 22 |
| 445 | 106.60 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 22 |
| 448 | 106.61 | humidity | 80 | 14400 | < th | dose independent | rect. | 16 | 2 |
| 459 | 106.61 | humidity | 90 | 14400 | < th | dose independent | rect. | 7 | 23 |
| 467 | 106.62 | humidity | 90 | 14400 | > th | dose independent | rect. | 7 | 20 |
| 504 | 106.64 | humidity | 90 | 14400 | < th | dose independent | rect. | 5 | 22 |
| 521 | 106.65 | humidity | 90 | 14400 | > th | dose independent | rect. | 4 | 23 |
| 522 | 106.65 | humidity | 80 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 547 | 106.68 | humidity | 90 | 14400 | > th | dose independent | no | NA | NA |
| 555 | 106.68 | humidity | 90 | 14400 | < th | dose independent | rect. | 24 | 23 |
| 569 | 106.69 | humidity | 90 | 14400 | > th | dose independent | rect. | 2 | 23 |
| 598 | 106.72 | humidity | 90 | 14400 | < th | dose independent | no | NA | NA |
| 687 | 106.78 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 697 | 106.79 | humidity | 90 | 14400 | < th | dose independent | rect. | 20 | 23 |
| 744 | 106.83 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 12 |
| 846 | 106.95 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 3 |
| 855 | 106.96 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 12 |
| 883 | 107.00 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 15 | 1 |
| 904 | 107.03 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 15 |
| 906 | 107.04 | humidity | 80 | 14400 | < th | dose independent | rect. | 12 | 7 |
| 966 | 107.12 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 995 | 107.15 | humidity | 90 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 997 | 107.15 | wind | 9 | 43200 | > th | dose dependent | sin | 12 | NA |