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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0521600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to NBS-LRR type resistance protein (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.2 (0.0192) R2 : 0.000478
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0189 (0.0404) R2dN8 : 0.000617 R2N8 : 0.000478
σ : 0.361
deviance : 59.96
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
56.43 0.353 3.21 0.176 0.106 0.232 0.0967 1.09 -0.0387 7.5 89.02 5860 -- --
58.17 0.355 3.2 0.138 0.129 0.244 0.0806 -- -0.0465 7.21 89.34 5087 -- --
56.45 0.35 3.21 0.177 0.108 0.233 -- 1.09 -0.0389 7.15 89 5866 -- --
58.12 0.355 3.2 0.123 0.14 0.286 -- -- -0.0731 7.31 91.94 5115 -- --
57.05 0.352 3.21 0.18 -- 0.231 -- 1.08 -0.0367 -- 89 5832 -- --
59.08 0.36 3.19 0.0938 0.107 -- 0.0785 -- -0.00971 7.28 -- -- -- --
59.09 0.36 3.19 0.0952 0.108 -- -- -- -0.0101 6.98 -- -- -- --
58.73 0.357 3.21 0.11 -- 0.264 -- -- -0.0608 -- 88.01 5729 -- --
58.4 0.356 3.2 -- 0.139 0.277 -- -- -0.0736 7.37 88 5115 -- --
59.71 0.361 3.19 0.0974 -- -- -- -- -0.00806 -- -- -- -- --
59.33 0.36 3.19 -- 0.109 -- -- -- -0.0207 6.93 -- -- -- --
59.06 0.358 3.21 -- -- 0.252 -- -- -0.0683 -- 87.52 5716 -- --
59.96 0.361 3.2 -- -- -- -- -- -0.0189 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 53.50 precipitation 0.1 720 < th dose independent rect. 15 8
2 53.50 precipitation 0.1 720 < th dose dependent rect. 15 8
3 53.53 atmosphere 995.0 720 > th dose independent rect. 23 16
4 53.66 temperature 10.0 720 > th dose independent rect. 15 8
5 53.66 temperature 10.0 720 > th dose independent rect. 23 16
6 53.72 temperature 10.0 720 > th dose independent rect. 3 8
7 53.72 atmosphere 995.0 720 > th dose independent rect. 3 8
8 53.72 temperature 10.0 720 > th dose independent rect. 11 16
9 53.79 humidity 50.0 720 > th dose independent rect. 3 8
11 53.95 atmosphere 1000.0 30 > th dose independent rect. 23 23
12 53.96 wind 9.0 720 < th dose independent rect. 3 8
13 53.97 precipitation 0.1 720 < th dose independent rect. 11 16
14 53.97 precipitation 0.1 720 < th dose dependent rect. 11 16
16 54.26 atmosphere 995.0 720 > th dose independent rect. 11 16
17 54.28 radiation 10.0 43200 < th dose dependent rect. 23 1
18 54.29 atmosphere 995.0 720 > th dose independent rect. 15 8
19 54.48 atmosphere 1000.0 30 > th dose independent rect. 3 23
21 54.52 atmosphere 1015.0 720 < th dose independent rect. 3 8
22 54.53 precipitation 0.1 1440 < th dose independent rect. 23 1
24 54.53 precipitation 0.1 1440 < th dose dependent rect. 23 1
25 54.55 radiation 40.0 720 < th dose independent rect. 15 8
29 54.68 atmosphere 1005.0 10 > th dose dependent rect. 2 2
30 54.69 atmosphere 1005.0 90 > th dose dependent rect. 2 1
38 54.85 temperature 25.0 10 > th dose dependent rect. 22 1
40 54.88 atmosphere 1010.0 30 < th dose dependent rect. 2 1
44 54.92 temperature 25.0 30 > th dose independent rect. 22 1
45 54.92 wind 1.0 30 < th dose dependent rect. 2 1
48 54.93 wind 9.0 1440 < th dose independent rect. 23 1
50 54.93 temperature 10.0 1440 > th dose independent rect. 23 1
53 54.93 temperature 30.0 1440 < th dose independent rect. 23 1
57 54.93 humidity 50.0 1440 > th dose independent rect. 23 1
67 54.93 atmosphere 995.0 1440 > th dose independent rect. 23 1
68 54.93 radiation 1.0 1440 < th dose independent rect. 23 1
88 54.93 temperature 10.0 1440 > th dose independent rect. 24 23
102 54.95 atmosphere 1005.0 30 > th dose dependent rect. 22 1
103 54.96 wind 3.0 30 < th dose independent rect. 22 1
104 54.96 humidity 80.0 30 > th dose independent rect. 22 1
106 54.97 wind 1.0 30 > th dose independent rect. 22 1
107 54.97 wind 1.0 10 < th dose independent rect. 2 1
109 54.97 humidity 90.0 30 < th dose independent rect. 22 1
111 54.98 atmosphere 1005.0 30 > th dose independent rect. 22 1
114 54.98 atmosphere 995.0 30 > th dose dependent rect. 22 1
118 54.99 precipitation 0.1 720 < th dose independent rect. 3 8
120 54.99 wind 7.0 30 < th dose dependent rect. 22 1
122 54.99 precipitation 0.1 720 < th dose dependent rect. 3 8
125 55.00 temperature 10.0 30 > th dose independent rect. 22 1
127 55.00 temperature 30.0 30 < th dose independent rect. 22 1
128 55.00 humidity 50.0 30 > th dose independent rect. 22 1
131 55.00 atmosphere 995.0 30 > th dose independent rect. 22 1
133 55.00 atmosphere 1010.0 30 < th dose independent rect. 22 1
135 55.00 radiation 1.0 30 < th dose independent rect. 22 1
140 55.00 precipitation 0.1 30 < th dose independent rect. 22 1
141 55.00 temperature 10.0 30 > th dose independent rect. 23 23
144 55.00 humidity 50.0 30 > th dose dependent rect. 22 1
147 55.00 radiation 1.0 30 < th dose dependent rect. 22 1
152 55.00 precipitation 0.1 30 < th dose dependent rect. 22 1
157 55.02 temperature 15.0 10 > th dose independent rect. 3 23
159 55.02 humidity 90.0 30 < th dose dependent rect. 22 1
161 55.03 temperature 25.0 10 < th dose independent rect. 2 1
163 55.03 atmosphere 1015.0 30 < th dose dependent rect. 22 1
166 55.04 temperature 10.0 10 > th dose independent rect. 2 1
169 55.04 humidity 50.0 10 > th dose independent rect. 2 1
172 55.04 atmosphere 995.0 10 > th dose independent rect. 2 1
173 55.04 atmosphere 1010.0 10 < th dose independent rect. 2 1
175 55.04 radiation 1.0 10 < th dose independent rect. 2 1
180 55.04 precipitation 0.1 10 < th dose independent rect. 2 1
182 55.04 radiation 1.0 10 < th dose dependent rect. 2 1
187 55.04 precipitation 0.1 10 < th dose dependent rect. 2 1
188 55.05 wind 1.0 30 > th dose dependent rect. 22 1
190 55.06 temperature 30.0 10 < th dose dependent rect. 2 1
191 55.06 humidity 50.0 10 > th dose dependent rect. 2 1
193 55.06 humidity 90.0 30 > th dose dependent rect. 2 1
195 55.07 temperature 10.0 10 > th dose dependent rect. 2 1
201 55.08 precipitation 0.1 30 < th dose independent rect. 23 23
203 55.08 precipitation 0.1 30 < th dose dependent rect. 23 23
216 55.09 temperature 30.0 30 < th dose dependent rect. 22 1
260 55.15 atmosphere 995.0 30 > th dose dependent rect. 2 1
263 55.16 wind 1.0 30 > th dose independent rect. 2 1
300 55.20 wind 9.0 30 < th dose independent rect. 3 23
306 55.21 wind 9.0 30 < th dose independent rect. 23 23
312 55.27 precipitation 0.1 720 < th dose independent rect. 23 16
313 55.27 precipitation 0.1 720 < th dose dependent rect. 23 16
317 55.28 radiation 1.0 43200 < th dose dependent rect. 3 1
327 55.36 wind 9.0 720 < th dose independent rect. 15 8
340 55.55 precipitation 0.1 30 < th dose independent rect. 3 23
341 55.55 humidity 80.0 14400 < th dose dependent rect. 4 5
342 55.55 precipitation 0.1 30 < th dose dependent rect. 3 23
356 55.66 humidity 50.0 30 > th dose independent rect. 23 23
374 55.80 wind 9.0 720 < th dose independent rect. 23 16
375 55.80 wind 1.0 30 > th dose independent rect. 23 23
381 55.81 wind 9.0 1440 < th dose independent rect. 3 1
382 55.81 temperature 10.0 1440 > th dose independent rect. 3 1
385 55.81 temperature 30.0 1440 < th dose independent rect. 3 1
389 55.81 humidity 50.0 1440 > th dose independent rect. 3 1
398 55.81 atmosphere 995.0 1440 > th dose independent rect. 3 1
399 55.81 radiation 1.0 1440 < th dose independent rect. 3 1
419 55.81 temperature 10.0 1440 > th dose independent rect. 4 23
438 55.86 wind 1.0 720 > th dose independent rect. 15 8
441 55.89 humidity 70.0 14400 > th dose independent rect. 8 1
443 55.91 wind 1.0 14400 < th dose dependent rect. 6 1
451 55.99 humidity 90.0 90 < th dose independent rect. 2 1
459 56.05 temperature 30.0 720 < th dose independent rect. 15 8
461 56.05 humidity 80.0 14400 < th dose dependent rect. 23 11
488 56.08 humidity 70.0 14400 < th dose independent rect. 8 1
489 56.08 humidity 70.0 14400 > th dose independent rect. 4 5
491 56.09 humidity 70.0 14400 > th dose independent rect. 6 3
501 56.10 humidity 50.0 30 > th dose independent rect. 3 23
510 56.14 humidity 70.0 14400 < th dose independent rect. 7 3
548 56.28 temperature 25.0 270 > th dose independent rect. 19 8
570 56.37 humidity 50.0 720 > th dose independent rect. 23 16
573 56.38 wind 9.0 720 < th dose independent rect. 11 16
579 56.40 wind 1.0 14400 < th dose independent rect. 6 1
582 56.41 wind 1.0 14400 < th dose dependent rect. 4 4
584 56.44 wind 5.0 14400 < th dose independent rect. 11 1
585 56.44 humidity 70.0 4320 > th dose independent rect. 10 1
587 56.44 wind 1.0 14400 > th dose independent rect. 4 3
597 56.46 wind 1.0 14400 < th dose independent rect. 4 3
601 56.46 humidity 50.0 4320 > th dose dependent rect. 11 1
607 56.47 humidity 70.0 4320 > th dose dependent rect. 3 8
619 56.49 humidity 70.0 4320 < th dose independent rect. 10 1
635 56.51 temperature 25.0 720 > th dose dependent rect. 3 5
650 56.53 humidity 70.0 4320 > th dose independent rect. 8 5
653 56.53 humidity 90.0 4320 < th dose dependent rect. 11 1
660 56.53 humidity 90.0 4320 < th dose dependent rect. 3 10
664 56.54 humidity 70.0 4320 > th dose independent sin 5 NA
670 56.54 humidity 60.0 14400 < th dose dependent rect. 12 1
710 56.55 humidity 50.0 4320 > th dose dependent rect. 23 14
777 56.58 humidity 90.0 4320 < th dose dependent sin 5 NA
813 56.60 humidity 50.0 4320 > th dose dependent sin 5 NA
830 56.61 wind 5.0 14400 < th dose independent rect. 11 4
851 56.62 humidity 70.0 4320 < th dose independent sin 5 NA
881 56.62 humidity 50.0 14400 > th dose dependent rect. 8 1