Os01g0521200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os01g0521200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 131.58 | 0.539 | 6.77 | -0.503 | 0.748 | 0.668 | 0.277 | 2.34 | 0.949 | 23.3 | 64 | 4770 | -- | -- |
| 134.38 | 0.54 | 6.79 | -0.541 | 0.751 | 0.938 | 0.278 | -- | 0.845 | 23.7 | 65.03 | 4056 | -- | -- |
| 131.9 | 0.535 | 6.78 | -0.514 | 0.746 | 0.665 | -- | 2.34 | 0.948 | 23.3 | 64.34 | 4763 | -- | -- |
| 134.56 | 0.54 | 6.8 | -0.58 | 0.809 | 0.953 | -- | -- | 0.83 | 23.6 | 65.82 | 4049 | -- | -- |
| 165.65 | 0.599 | 6.76 | -0.515 | -- | 0.762 | -- | 2.19 | 0.942 | -- | 64.04 | 4600 | -- | -- |
| 150.58 | 0.575 | 6.75 | -0.546 | 0.731 | -- | 0.223 | -- | 1.03 | 23.5 | -- | -- | -- | -- |
| 150.78 | 0.575 | 6.75 | -0.555 | 0.73 | -- | -- | -- | 1.03 | 23.5 | -- | -- | -- | -- |
| 170.41 | 0.608 | 6.78 | -0.571 | -- | 0.895 | -- | -- | 0.891 | -- | 66 | 4478 | -- | -- |
| 143.42 | 0.558 | 6.79 | -- | 0.805 | 0.933 | -- | -- | 0.898 | 23.5 | 65.99 | 4035 | -- | -- |
| 184.25 | 0.634 | 6.74 | -0.536 | -- | -- | -- | -- | 1.04 | -- | -- | -- | -- | -- |
| 158.91 | 0.59 | 6.74 | -- | 0.724 | -- | -- | -- | 1.09 | 23.4 | -- | -- | -- | -- |
| 179.18 | 0.623 | 6.76 | -- | -- | 0.861 | -- | -- | 0.951 | -- | 65.57 | 4432 | -- | -- |
| 191.81 | 0.646 | 6.72 | -- | -- | -- | -- | -- | 1.1 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 119.07 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 5 |
| 2 | 119.07 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 5 |
| 3 | 119.31 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 5 |
| 4 | 119.34 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 5 |
| 5 | 119.69 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 8 |
| 6 | 119.76 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 8 |
| 21 | 120.78 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 3 |
| 22 | 120.78 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 3 |
| 23 | 121.06 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 3 |
| 24 | 121.06 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 3 |
| 45 | 121.99 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 19 | 2 |
| 78 | 122.65 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 80 | 122.65 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 99 | 122.94 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 100 | 122.94 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 103 | 123.04 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 19 | 2 |
| 104 | 123.07 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 107 | 123.10 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 119 | 123.31 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 149 | 123.59 | wind | 3.0 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 190 | 123.98 | wind | 5.0 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 229 | 124.26 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 236 | 124.32 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 10 | 6 |
| 258 | 124.47 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 299 | 124.69 | wind | 5.0 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 303 | 124.71 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 360 | 124.99 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 369 | 125.02 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 19 | 1 |
| 381 | 125.04 | temperature | 30.0 | 14400 | < th | dose dependent | sin | 23 | NA |
| 383 | 125.05 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 9 | 8 |
| 437 | 125.21 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 10 | 4 |
| 446 | 125.23 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 9 | 5 |
| 457 | 125.26 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 10 | 2 |
| 559 | 125.48 | temperature | 10.0 | 14400 | > th | dose dependent | sin | 23 | NA |
| 635 | 125.64 | wind | 5.0 | 14400 | < th | dose independent | rect. | 4 | 5 |
| 659 | 125.68 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 10 | 4 |
| 666 | 125.71 | wind | 5.0 | 14400 | > th | dose independent | rect. | 5 | 4 |
| 676 | 125.72 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 21 | 9 |
| 678 | 125.73 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 697 | 125.76 | wind | 3.0 | 14400 | > th | dose dependent | rect. | 21 | 12 |
| 826 | 125.97 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 10 | 4 |
| 851 | 126.00 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 21 | 9 |
| 862 | 126.02 | wind | 5.0 | 14400 | < th | dose independent | rect. | 3 | 7 |
| 868 | 126.03 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 869 | 126.03 | wind | 5.0 | 14400 | > th | dose independent | rect. | 3 | 7 |
| 878 | 126.05 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 967 | 126.17 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 997 | 126.20 | temperature | 20.0 | 14400 | > th | dose independent | sin | 16 | NA |