Os01g0520600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os01g0520600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Disease resistance protein family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35.4 | 0.28 | 9.31 | 0.887 | 0.945 | -0.24 | 0.0957 | 5.82 | 0.09 | 9.38 | 27.46 | 873 | -- | -- |
| 38.22 | 0.288 | 9.41 | 0.0461 | 0.926 | 0.384 | -0.309 | -- | 0.0154 | 9.48 | 29.69 | 2166 | -- | -- |
| 35.38 | 0.277 | 9.31 | 0.913 | 0.944 | -0.286 | -- | 6.18 | 0.0819 | 9.37 | 27.84 | 869 | -- | -- |
| 38.23 | 0.288 | 9.4 | 0.000194 | 0.948 | 0.397 | -- | -- | 0.00446 | 9.36 | 30.1 | 2180 | -- | -- |
| 77.31 | 0.41 | 9.3 | 1.25 | -- | -0.917 | -- | 6.64 | 0.255 | -- | 24.89 | 740 | -- | -- |
| 42.72 | 0.306 | 9.42 | 0.1 | 0.909 | -- | -0.313 | -- | -0.0589 | 9.3 | -- | -- | -- | -- |
| 43.07 | 0.307 | 9.42 | 0.089 | 0.91 | -- | -- | -- | -0.0592 | 9.31 | -- | -- | -- | -- |
| 86.39 | 0.433 | 9.43 | -0.0149 | -- | 0.319 | -- | -- | -0.0196 | -- | 30 | 5849 | -- | -- |
| 38.23 | 0.288 | 9.4 | -- | 0.948 | 0.396 | -- | -- | 0.00391 | 9.36 | 30.1 | 2180 | -- | -- |
| 91.3 | 0.446 | 9.44 | 0.0848 | -- | -- | -- | -- | -0.0554 | -- | -- | -- | -- | -- |
| 43.28 | 0.308 | 9.42 | -- | 0.909 | -- | -- | -- | -0.0691 | 9.3 | -- | -- | -- | -- |
| 86.38 | 0.433 | 9.43 | -- | -- | 0.322 | -- | -- | -0.0173 | -- | 30.1 | 5850 | -- | -- |
| 91.49 | 0.446 | 9.44 | -- | -- | -- | -- | -- | -0.0648 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.78 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 8 | 3 |
| 2 | 33.82 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 9 | 2 |
| 29 | 34.62 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 21 | 2 |
| 32 | 34.65 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 3 | 8 |
| 33 | 34.67 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 3 | 9 |
| 43 | 34.72 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 20 | 16 |
| 44 | 34.73 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 12 |
| 49 | 34.76 | wind | 9 | 43200 | > th | dose independent | rect. | 16 | 14 |
| 60 | 34.80 | wind | 7 | 43200 | > th | dose dependent | rect. | 17 | 13 |
| 104 | 34.92 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 12 |
| 106 | 34.93 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 110 | 34.94 | wind | 9 | 43200 | < th | dose independent | rect. | 16 | 14 |
| 111 | 34.94 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 21 | 15 |
| 159 | 35.03 | atmosphere | 1005 | 14400 | < th | dose independent | sin | 7 | NA |
| 191 | 35.10 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 20 | 9 |
| 195 | 35.11 | atmosphere | 1005 | 14400 | > th | dose independent | sin | 7 | NA |
| 206 | 35.12 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 3 | 2 |
| 223 | 35.15 | wind | 9 | 43200 | > th | dose independent | rect. | 16 | 7 |
| 251 | 35.19 | wind | 9 | 43200 | < th | dose independent | rect. | 16 | 7 |
| 273 | 35.21 | wind | 9 | 43200 | < th | dose independent | rect. | 16 | 9 |
| 332 | 35.30 | wind | 7 | 43200 | > th | dose independent | sin | 12 | NA |
| 354 | 35.31 | wind | 7 | 43200 | > th | dose dependent | sin | 12 | NA |
| 372 | 35.35 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 8 |
| 398 | 35.38 | wind | 9 | 43200 | < th | dose independent | sin | 12 | NA |
| 466 | 35.45 | wind | 9 | 14400 | > th | dose dependent | rect. | 18 | 3 |
| 467 | 35.46 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 506 | 35.49 | wind | 7 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 507 | 35.49 | wind | 9 | 14400 | > th | dose independent | rect. | 18 | 3 |
| 551 | 35.54 | wind | 9 | 14400 | < th | dose independent | rect. | 18 | 3 |
| 571 | 35.56 | temperature | 15 | 4320 | > th | dose dependent | rect. | 17 | 2 |
| 637 | 35.63 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 19 |
| 679 | 35.69 | atmosphere | 1005 | 14400 | < th | dose independent | no | NA | NA |
| 689 | 35.69 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 2 | 22 |
| 708 | 35.71 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 6 | 23 |
| 812 | 35.82 | wind | 1 | 4320 | > th | dose independent | rect. | 4 | 2 |
| 822 | 35.82 | temperature | 25 | 720 | > th | dose dependent | rect. | 13 | 20 |
| 830 | 35.83 | temperature | 30 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 833 | 35.84 | wind | 1 | 4320 | < th | dose independent | rect. | 4 | 2 |
| 916 | 35.91 | temperature | 30 | 1440 | > th | dose independent | rect. | 8 | 7 |
| 936 | 35.91 | wind | 7 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 985 | 35.94 | temperature | 25 | 720 | > th | dose dependent | sin | 16 | NA |