Os01g0520500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0520500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.51 | 0.223 | 3.08 | 0.13 | 0.104 | -0.162 | -0.00155 | -0.845 | -0.00818 | 6.98 | 50.37 | 5912 | -- | -- |
| 23.38 | 0.225 | 3.08 | 0.0711 | 0.113 | -0.193 | 0.0121 | -- | -0.0474 | 7.33 | 71.6 | 8079 | -- | -- |
| 22.5 | 0.221 | 3.08 | 0.128 | 0.105 | -0.158 | -- | -0.846 | -0.00631 | 6.95 | 39.16 | 5913 | -- | -- |
| 23.38 | 0.225 | 3.08 | 0.0695 | 0.115 | -0.185 | -- | -- | -0.0465 | 7.28 | 70.53 | 8064 | -- | -- |
| 23.06 | 0.224 | 3.08 | 0.126 | -- | -0.162 | -- | -0.836 | -0.00555 | -- | 35.04 | 5849 | -- | -- |
| 23.97 | 0.23 | 3.07 | 0.0453 | 0.102 | -- | -0.0253 | -- | 0.0133 | 6.82 | -- | -- | -- | -- |
| 23.97 | 0.229 | 3.07 | 0.045 | 0.102 | -- | -- | -- | 0.0134 | 6.91 | -- | -- | -- | -- |
| 23.92 | 0.228 | 3.09 | 0.0758 | -- | -0.185 | -- | -- | -0.0494 | -- | 70 | 7113 | -- | -- |
| 23.5 | 0.226 | 3.08 | -- | 0.115 | -0.172 | -- | -- | -0.0505 | 7.22 | 70.59 | 8067 | -- | -- |
| 24.51 | 0.231 | 3.07 | 0.0471 | -- | -- | -- | -- | 0.0153 | -- | -- | -- | -- | -- |
| 24.02 | 0.229 | 3.07 | -- | 0.103 | -- | -- | -- | 0.00836 | 6.89 | -- | -- | -- | -- |
| 24.06 | 0.228 | 3.09 | -- | -- | -0.165 | -- | -- | -0.0514 | -- | 70 | 7119 | -- | -- |
| 24.57 | 0.231 | 3.07 | -- | -- | -- | -- | -- | 0.0101 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.03 | temperature | 25 | 30 | > th | dose independent | rect. | 4 | 1 |
| 4 | 22.17 | temperature | 25 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 6 | 22.41 | humidity | 80 | 14400 | < th | dose dependent | rect. | 21 | 13 |
| 7 | 22.42 | wind | 1 | 30 | > th | dose dependent | rect. | 4 | 1 |
| 8 | 22.42 | humidity | 80 | 14400 | < th | dose dependent | rect. | 3 | 6 |
| 17 | 22.50 | humidity | 70 | 14400 | > th | dose independent | rect. | 8 | 2 |
| 31 | 22.52 | humidity | 70 | 14400 | < th | dose independent | rect. | 8 | 2 |
| 46 | 22.55 | humidity | 90 | 10 | < th | dose independent | rect. | 4 | 1 |
| 62 | 22.62 | humidity | 90 | 10 | < th | dose dependent | rect. | 3 | 2 |
| 71 | 22.67 | humidity | 80 | 4320 | > th | dose dependent | rect. | 6 | 3 |
| 77 | 22.68 | humidity | 80 | 14400 | < th | dose dependent | sin | 8 | NA |
| 87 | 22.69 | atmosphere | 1005 | 90 | > th | dose dependent | rect. | 2 | 2 |
| 88 | 22.69 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 2 | 3 |
| 127 | 22.73 | humidity | 70 | 4320 | > th | dose independent | rect. | 8 | 10 |
| 161 | 22.74 | humidity | 50 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 198 | 22.76 | humidity | 70 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 204 | 22.76 | humidity | 70 | 4320 | > th | dose independent | rect. | 8 | 7 |
| 208 | 22.76 | humidity | 70 | 4320 | < th | dose independent | rect. | 8 | 9 |
| 222 | 22.76 | temperature | 25 | 720 | > th | dose dependent | rect. | 24 | 9 |
| 229 | 22.76 | humidity | 50 | 4320 | > th | dose dependent | rect. | 23 | 16 |
| 231 | 22.77 | humidity | 70 | 4320 | > th | dose independent | sin | 0 | NA |
| 235 | 22.77 | humidity | 60 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 236 | 22.77 | humidity | 60 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 238 | 22.77 | humidity | 60 | 14400 | < th | dose independent | rect. | 10 | 3 |
| 239 | 22.77 | humidity | 70 | 4320 | > th | dose independent | rect. | 14 | 4 |
| 260 | 22.77 | humidity | 70 | 4320 | < th | dose independent | rect. | 20 | 21 |
| 262 | 22.77 | humidity | 60 | 4320 | > th | dose dependent | sin | 4 | NA |
| 348 | 22.78 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 21 | 23 |
| 353 | 22.78 | wind | 1 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 387 | 22.79 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 391 | 22.79 | humidity | 70 | 4320 | < th | dose independent | rect. | 14 | 3 |
| 412 | 22.79 | temperature | 25 | 720 | > th | dose dependent | rect. | 3 | 5 |
| 459 | 22.80 | atmosphere | 995 | 720 | > th | dose independent | rect. | 23 | 16 |
| 511 | 22.81 | humidity | 70 | 4320 | > th | dose independent | no | NA | NA |
| 512 | 22.81 | temperature | 25 | 270 | > th | dose independent | rect. | 1 | 1 |
| 514 | 22.81 | wind | 3 | 14400 | > th | dose independent | rect. | 10 | 2 |
| 516 | 22.81 | wind | 1 | 14400 | < th | dose independent | rect. | 4 | 3 |
| 610 | 22.81 | humidity | 70 | 4320 | > th | dose independent | rect. | 10 | 23 |
| 611 | 22.81 | humidity | 70 | 4320 | > th | dose independent | rect. | 13 | 23 |
| 644 | 22.81 | humidity | 90 | 4320 | < th | dose dependent | rect. | 23 | 17 |
| 652 | 22.82 | humidity | 70 | 4320 | < th | dose independent | sin | 0 | NA |
| 655 | 22.82 | temperature | 30 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 661 | 22.82 | humidity | 70 | 4320 | > th | dose independent | rect. | 10 | 3 |
| 695 | 22.82 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 21 | 14 |
| 719 | 22.82 | humidity | 70 | 4320 | > th | dose independent | rect. | 16 | 23 |
| 721 | 22.82 | atmosphere | 1000 | 90 | > th | dose independent | rect. | 3 | 23 |
| 742 | 22.82 | humidity | 90 | 4320 | < th | dose dependent | rect. | 4 | 12 |
| 775 | 22.83 | wind | 3 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 827 | 22.83 | humidity | 50 | 4320 | > th | dose dependent | rect. | 11 | 2 |
| 885 | 22.84 | wind | 1 | 14400 | > th | dose independent | rect. | 4 | 3 |
| 915 | 22.84 | humidity | 90 | 4320 | < th | dose dependent | sin | 4 | NA |
| 998 | 22.85 | humidity | 70 | 4320 | > th | dose dependent | rect. | 10 | 1 |