Os01g0519400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os01g0519400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.37 | 0.222 | 11.8 | -0.627 | 0.638 | -0.705 | -0.051 | 0.264 | -0.177 | 19 | 24.15 | 1582 | -- | -- |
| 22.01 | 0.219 | 11.8 | -0.529 | 0.642 | -0.661 | -0.0808 | -- | -0.177 | 19 | 23.6 | 1609 | -- | -- |
| 22.22 | 0.22 | 11.8 | -0.603 | 0.626 | -0.663 | -- | 0.203 | -0.174 | 19 | 23.9 | 1596 | -- | -- |
| 22.01 | 0.218 | 11.8 | -0.528 | 0.641 | -0.662 | -- | -- | -0.182 | 19 | 23.57 | 1612 | -- | -- |
| 30.84 | 0.259 | 11.7 | -0.572 | -- | -0.741 | -- | 0.649 | -0.145 | -- | 25.7 | 577 | -- | -- |
| 40.95 | 0.3 | 11.7 | -0.257 | 0.636 | -- | -0.0789 | -- | 0.115 | 19.1 | -- | -- | -- | -- |
| 40.96 | 0.3 | 11.7 | -0.256 | 0.636 | -- | -- | -- | 0.115 | 19.1 | -- | -- | -- | -- |
| 30.31 | 0.256 | 11.7 | -0.484 | -- | -0.774 | -- | -- | -0.191 | -- | 25.3 | 551 | -- | -- |
| 28.5 | 0.249 | 11.7 | -- | 0.644 | -0.573 | -- | -- | -0.081 | 18.7 | 23.2 | 1353 | -- | -- |
| 62.31 | 0.369 | 11.7 | -0.268 | -- | -- | -- | -- | 0.103 | -- | -- | -- | -- | -- |
| 42.68 | 0.306 | 11.7 | -- | 0.639 | -- | -- | -- | 0.143 | 19.1 | -- | -- | -- | -- |
| 36.31 | 0.281 | 11.7 | -- | -- | -0.693 | -- | -- | -0.122 | -- | 25.29 | 484 | -- | -- |
| 64.2 | 0.374 | 11.7 | -- | -- | -- | -- | -- | 0.133 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.35 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 6 |
| 5 | 22.49 | temperature | 25 | 1440 | < th | dose independent | sin | 18 | NA |
| 6 | 22.57 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 12 |
| 14 | 22.59 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 10 |
| 19 | 22.60 | temperature | 25 | 1440 | < th | dose independent | rect. | 7 | 18 |
| 30 | 22.65 | temperature | 25 | 1440 | > th | dose independent | sin | 18 | NA |
| 35 | 22.67 | temperature | 25 | 1440 | < th | dose independent | rect. | 11 | 13 |
| 37 | 22.69 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 38 | 22.69 | temperature | 20 | 720 | > th | dose dependent | rect. | 13 | 20 |
| 39 | 22.70 | temperature | 25 | 1440 | > th | dose independent | rect. | 7 | 18 |
| 49 | 22.72 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 6 |
| 54 | 22.73 | temperature | 20 | 1440 | > th | dose dependent | sin | 14 | NA |
| 64 | 22.77 | temperature | 25 | 1440 | > th | dose independent | rect. | 11 | 13 |
| 84 | 22.82 | temperature | 25 | 1440 | > th | dose independent | rect. | 13 | 11 |
| 105 | 22.86 | temperature | 25 | 1440 | > th | dose independent | rect. | 16 | 4 |
| 135 | 22.90 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 167 | 22.96 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 246 | 23.11 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 252 | 23.12 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 258 | 23.13 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 315 | 23.21 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 317 | 23.22 | temperature | 25 | 1440 | < th | dose independent | rect. | 10 | 23 |
| 328 | 23.23 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 20 |
| 335 | 23.24 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 22 |
| 336 | 23.24 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 351 | 23.27 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 23 |
| 382 | 23.33 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 404 | 23.36 | temperature | 25 | 1440 | < th | dose independent | no | NA | NA |
| 422 | 23.38 | temperature | 20 | 4320 | > th | dose dependent | rect. | 21 | 3 |
| 430 | 23.39 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 23 |
| 438 | 23.40 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 450 | 23.42 | temperature | 25 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 455 | 23.42 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 468 | 23.45 | temperature | 25 | 1440 | > th | dose independent | no | NA | NA |
| 479 | 23.45 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 523 | 23.50 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 552 | 23.53 | temperature | 25 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 588 | 23.57 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 592 | 23.57 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 603 | 23.59 | temperature | 15 | 10 | > th | dose dependent | no | NA | NA |
| 624 | 23.61 | temperature | 30 | 1440 | < th | dose dependent | sin | 16 | NA |
| 640 | 23.62 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 641 | 23.62 | temperature | 20 | 1440 | > th | dose dependent | rect. | 22 | 23 |
| 676 | 23.65 | temperature | 20 | 1440 | > th | dose dependent | rect. | 2 | 23 |
| 684 | 23.66 | temperature | 25 | 1440 | < th | dose independent | rect. | 20 | 23 |
| 719 | 23.69 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 840 | 23.80 | temperature | 20 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 977 | 23.92 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 23 |