Os01g0518800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0518800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.25 | 0.25 | 8.52 | 0.514 | 0.679 | -0.299 | 0.706 | -0.109 | 0.216 | 10.5 | 21.8 | 59 | -- | -- |
| 28.23 | 0.249 | 8.51 | 0.533 | 0.688 | -0.29 | 0.633 | -- | 0.221 | 10.5 | 21.8 | 58 | -- | -- |
| 29.67 | 0.256 | 8.51 | 0.607 | 0.682 | -0.287 | -- | 0.178 | 0.232 | 10.5 | 21.7 | 49 | -- | -- |
| 29.87 | 0.256 | 8.51 | 0.56 | 0.683 | -0.29 | -- | -- | 0.222 | 10.5 | 21.7 | 49 | -- | -- |
| 51 | 0.333 | 8.54 | 0.497 | -- | -0.419 | -- | -0.517 | 0.207 | -- | 20.72 | 765 | -- | -- |
| 32.87 | 0.269 | 8.53 | 0.453 | 0.604 | -- | 0.615 | -- | 0.142 | 10.2 | -- | -- | -- | -- |
| 34.37 | 0.275 | 8.53 | 0.477 | 0.602 | -- | -- | -- | 0.144 | 10.1 | -- | -- | -- | -- |
| 43.56 | 0.307 | 8.52 | 0.628 | -- | -0.493 | -- | -- | 0.258 | -- | 25.2 | 797 | -- | -- |
| 37.76 | 0.288 | 8.53 | -- | 0.659 | -0.214 | -- | -- | 0.142 | 10.3 | 21.88 | 45 | -- | -- |
| 56.29 | 0.351 | 8.55 | 0.469 | -- | -- | -- | -- | 0.143 | -- | -- | -- | -- | -- |
| 40.36 | 0.297 | 8.54 | -- | 0.6 | -- | -- | -- | 0.0905 | 10.1 | -- | -- | -- | -- |
| 53.12 | 0.339 | 8.53 | -- | -- | -0.437 | -- | -- | 0.236 | -- | 25.07 | 780 | -- | -- |
| 62.08 | 0.368 | 8.56 | -- | -- | -- | -- | -- | 0.0907 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.05 | temperature | 20.0 | 10 | > th | dose independent | rect. | 18 | 18 |
| 3 | 28.13 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 18 | 10 |
| 4 | 28.19 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 2 | 14 |
| 25 | 28.39 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 17 | 13 |
| 36 | 28.43 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 11 | 19 |
| 39 | 28.48 | humidity | 70.0 | 1440 | > th | dose dependent | sin | 5 | NA |
| 43 | 28.49 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 20 | 11 |
| 45 | 28.50 | humidity | 80.0 | 1440 | > th | dose dependent | sin | 3 | NA |
| 54 | 28.54 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 3 | 12 |
| 58 | 28.55 | temperature | 20.0 | 90 | > th | dose independent | rect. | 17 | 23 |
| 73 | 28.60 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 5 | 21 |
| 77 | 28.62 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 11 | 11 |
| 88 | 28.65 | temperature | 20.0 | 270 | > th | dose independent | rect. | 15 | 20 |
| 124 | 28.71 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 146 | 28.74 | temperature | 20.0 | 90 | > th | dose independent | rect. | 13 | 23 |
| 198 | 28.83 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 4 | 4 |
| 206 | 28.84 | temperature | 25.0 | 720 | > th | dose independent | rect. | 15 | 4 |
| 216 | 28.86 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 3 | 6 |
| 225 | 28.87 | temperature | 20.0 | 90 | > th | dose independent | rect. | 6 | 23 |
| 250 | 28.91 | temperature | 20.0 | 30 | > th | dose independent | rect. | 18 | 11 |
| 275 | 28.95 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 3 | 14 |
| 276 | 28.95 | temperature | 20.0 | 10 | > th | dose independent | rect. | 18 | 22 |
| 285 | 28.96 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 1 | 16 |
| 286 | 28.96 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 23 | 16 |
| 296 | 28.96 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 15 | 21 |
| 325 | 28.99 | humidity | 90.0 | 1440 | < th | dose independent | sin | 3 | NA |
| 337 | 28.99 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 338 | 28.99 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 341 | 29.00 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 3 | 6 |
| 352 | 29.00 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 7 | 23 |
| 353 | 29.01 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 358 | 29.01 | temperature | 25.0 | 90 | < th | dose dependent | no | NA | NA |
| 366 | 29.01 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 385 | 29.02 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 396 | 29.03 | temperature | 25.0 | 10 | < th | dose dependent | no | NA | NA |
| 408 | 29.03 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 412 | 29.03 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 414 | 29.04 | radiation | 10.0 | 4320 | > th | dose independent | rect. | 8 | 3 |
| 452 | 29.06 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 17 | 15 |
| 458 | 29.06 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 474 | 29.08 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 10 | 4 |
| 489 | 29.09 | temperature | 20.0 | 270 | > th | dose independent | rect. | 15 | 12 |
| 492 | 29.09 | temperature | 25.0 | 270 | < th | dose dependent | sin | 14 | NA |
| 509 | 29.10 | humidity | 80.0 | 1440 | > th | dose independent | sin | 4 | NA |
| 549 | 29.12 | temperature | 30.0 | 10 | < th | dose independent | rect. | 7 | 14 |
| 586 | 29.14 | temperature | 20.0 | 10 | > th | dose independent | rect. | 18 | 20 |
| 707 | 29.20 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 23 | 11 |
| 714 | 29.21 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 4 | 4 |
| 715 | 29.21 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 3 | 6 |
| 721 | 29.21 | humidity | 80.0 | 270 | < th | dose independent | rect. | 21 | 19 |
| 722 | 29.21 | temperature | 25.0 | 720 | < th | dose dependent | sin | 19 | NA |
| 751 | 29.23 | wind | 1.0 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 800 | 29.25 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 2 | 7 |
| 843 | 29.27 | temperature | 20.0 | 90 | < th | dose independent | rect. | 4 | 23 |
| 871 | 29.29 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 879 | 29.29 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 926 | 29.31 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 936 | 29.32 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 1 | 8 |
| 976 | 29.33 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 18 | 17 |
| 994 | 29.34 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 5 | 19 |