Os01g0518400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, BED-type predicted domain containing protein.
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Os01g0518400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, BED-type predicted domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 96.19 | 0.461 | 3.78 | 4.33 | 0.542 | -3.28 | 0.531 | -1.21 | 1.33 | 20.4 | 9.299 | 5620 | -- | -- |
| 97.42 | 0.46 | 3.74 | 4.59 | 0.547 | -3.21 | 0.525 | -- | 1.4 | 20.4 | 10.31 | 5595 | -- | -- |
| 97.08 | 0.459 | 3.78 | 4.31 | 0.543 | -3.28 | -- | -1.21 | 1.33 | 20.5 | 9.849 | 5609 | -- | -- |
| 98.33 | 0.462 | 3.74 | 4.57 | 0.547 | -3.21 | -- | -- | 1.4 | 20.5 | 10.65 | 5589 | -- | -- |
| 112.48 | 0.494 | 3.77 | 4.31 | -- | -3.27 | -- | -1.22 | 1.34 | -- | 11.76 | 5762 | -- | -- |
| 268.64 | 0.768 | 3.89 | 3.05 | 0.558 | -- | 0.48 | -- | 0.721 | 19.4 | -- | -- | -- | -- |
| 269.27 | 0.768 | 3.89 | 3.04 | 0.558 | -- | -- | -- | 0.722 | 19.4 | -- | -- | -- | -- |
| 113.65 | 0.497 | 3.72 | 4.57 | -- | -3.08 | -- | -- | 1.41 | -- | 14.02 | 5740 | -- | -- |
| 470.5 | 1.01 | 3.95 | -- | 1.2 | -1.9 | -- | -- | 0.576 | 18.5 | 21.51 | 450 | -- | -- |
| 285.86 | 0.79 | 3.88 | 3.03 | -- | -- | -- | -- | 0.713 | -- | -- | -- | -- | -- |
| 513.2 | 1.06 | 3.97 | -- | 0.533 | -- | -- | -- | 0.383 | 19.8 | -- | -- | -- | -- |
| 467.54 | 1.01 | 3.97 | -- | -- | -1.09 | -- | -- | 0.303 | -- | 27.8 | 1459 | -- | -- |
| 528.56 | 1.07 | 3.95 | -- | -- | -- | -- | -- | 0.377 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 97.86 | radiation | 1 | 14400 | > th | dose independent | rect. | 17 | 13 |
| 2 | 98.65 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 3 | 98.66 | radiation | 1 | 14400 | < th | dose independent | rect. | 17 | 13 |
| 4 | 98.68 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 7 | 99.23 | wind | 5 | 43200 | > th | dose independent | rect. | 9 | 3 |
| 9 | 99.38 | radiation | 1 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 21 | 99.54 | radiation | 1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 22 | 99.56 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 3 |
| 24 | 99.65 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 25 | 99.75 | radiation | 1 | 14400 | < th | dose independent | rect. | 17 | 9 |
| 27 | 99.76 | radiation | 1 | 14400 | < th | dose independent | rect. | 17 | 6 |
| 29 | 99.77 | radiation | 1 | 14400 | < th | dose independent | rect. | 17 | 3 |
| 35 | 99.95 | temperature | 20 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 36 | 100.03 | radiation | 1 | 14400 | < th | dose independent | rect. | 17 | 17 |
| 41 | 100.18 | temperature | 20 | 4320 | > th | dose dependent | rect. | 4 | 14 |
| 42 | 100.19 | temperature | 10 | 4320 | > th | dose dependent | rect. | 4 | 15 |
| 49 | 100.28 | radiation | 1 | 14400 | > th | dose independent | rect. | 17 | 17 |
| 52 | 100.32 | temperature | 20 | 4320 | > th | dose dependent | sin | 1 | NA |
| 66 | 100.40 | temperature | 10 | 4320 | > th | dose dependent | sin | 2 | NA |
| 71 | 100.43 | wind | 5 | 43200 | > th | dose independent | rect. | 5 | 9 |
| 141 | 100.68 | wind | 5 | 43200 | < th | dose independent | rect. | 5 | 9 |
| 156 | 100.73 | temperature | 20 | 4320 | > th | dose dependent | rect. | 5 | 9 |
| 188 | 100.85 | temperature | 10 | 4320 | > th | dose dependent | rect. | 4 | 10 |
| 221 | 100.96 | temperature | 10 | 4320 | > th | dose dependent | rect. | 5 | 6 |
| 444 | 101.52 | temperature | 10 | 4320 | > th | dose dependent | no | NA | NA |
| 496 | 101.65 | temperature | 10 | 4320 | > th | dose dependent | rect. | 15 | 23 |
| 497 | 101.66 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 516 | 101.71 | temperature | 10 | 4320 | > th | dose dependent | rect. | 12 | 23 |
| 585 | 101.85 | humidity | 90 | 43200 | > th | dose dependent | rect. | 17 | 6 |
| 591 | 101.86 | temperature | 30 | 4320 | < th | dose dependent | rect. | 5 | 6 |
| 599 | 101.88 | humidity | 90 | 43200 | > th | dose dependent | rect. | 18 | 4 |
| 606 | 101.89 | radiation | 1 | 14400 | < th | dose independent | rect. | 24 | 6 |
| 613 | 101.90 | radiation | 1 | 14400 | < th | dose independent | rect. | 22 | 8 |
| 625 | 101.93 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 664 | 102.00 | humidity | 90 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 668 | 102.02 | radiation | 1 | 14400 | < th | dose independent | sin | 11 | NA |
| 699 | 102.10 | radiation | 1 | 14400 | > th | dose independent | sin | 11 | NA |
| 837 | 102.51 | radiation | 20 | 4320 | > th | dose dependent | rect. | 15 | 17 |
| 838 | 102.52 | humidity | 90 | 43200 | < th | dose independent | rect. | 17 | 5 |
| 964 | 103.02 | radiation | 20 | 4320 | < th | dose independent | rect. | 15 | 17 |
| 975 | 103.07 | temperature | 10 | 4320 | > th | dose dependent | rect. | 15 | 4 |