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Os01g0515300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.16 (0.0416) R2 : 0.752
β1 : 4.51 (0.207) R2dD : 0.58 R2D : 0.0443
β2 : 1.14 (0.0926) R2dC : 0.0799 R2C : -0.000319
β3 : 4.09 (0.18) R2dE : 0.477 R2E : 0.317
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 9.2 (0.623) R2dD*E : 0.378 R2D*E : -0.902
γ1 : 1.12 (0.0916) R2dN8 : 0.149 R2N8 : 0.0966
σ : 0.71
deviance : 232.45
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C
peak time of C : 9.71
E
wheather : radiation
threshold : 1.01
memory length : 11554
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
231.13 0.714 7.21 4.55 1.07 4.13 -1.08 9.21 1.11 9.81 1.02 10136 -- --
325.6 0.84 7.32 3.76 1.49 3.08 -2.31 -- 0.926 7.4 2.15 9120 -- --
232.45 0.71 7.16 4.51 1.14 4.09 -- 9.2 1.12 9.71 1.01 11554 -- --
307.73 0.817 7.32 3.22 1.64 3.1 -- -- 0.878 7.59 2.2 9221 -- --
293.18 0.797 7.19 4.44 -- 4.13 -- 9.27 1.19 -- 1.001 11658 -- --
467.11 1.01 7.22 3.32 1.14 -- -0.843 -- 1.51 9.7 -- -- -- --
469.79 1.02 7.22 3.29 1.14 -- -- -- 1.51 9.65 -- -- -- --
372.91 0.899 7.4 3.29 -- 3.14 -- -- 0.888 -- 2.159 11756 -- --
264.27 0.757 7.47 -- 0.917 3.46 -- -- 0.404 6.82 0.7884 37838 -- --
547.3 1.09 7.26 3.28 -- -- -- -- 1.51 -- -- -- -- --
754.4 1.28 7.31 -- 1.14 -- -- -- 1.14 9.43 -- -- -- --
298.41 0.805 7.49 -- -- 3.64 -- -- 0.302 -- 0.6408 46320 -- --
830.48 1.35 7.34 -- -- -- -- -- 1.15 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 205.49 radiation 1 43200 < th dose dependent rect. 12 17
4 205.80 radiation 1 43200 < th dose dependent rect. 12 11
5 205.81 radiation 1 43200 < th dose dependent rect. 12 7
6 205.81 radiation 1 43200 < th dose dependent rect. 12 9
44 206.34 radiation 1 43200 < th dose dependent rect. 6 23
54 206.49 radiation 1 43200 < th dose dependent sin 19 NA
73 206.87 radiation 1 43200 < th dose dependent rect. 6 17
74 206.88 radiation 1 43200 < th dose dependent rect. 6 13
103 207.37 radiation 1 43200 < th dose dependent rect. 18 22
127 208.44 radiation 1 43200 < th dose dependent rect. 18 3
128 208.44 radiation 1 43200 < th dose dependent rect. 18 5
138 208.47 radiation 1 43200 < th dose dependent rect. 18 1
145 208.57 radiation 1 43200 < th dose dependent rect. 4 15
146 208.57 radiation 1 43200 < th dose dependent rect. 2 17
147 208.57 radiation 1 43200 < th dose dependent rect. 4 17
149 208.57 radiation 1 43200 < th dose dependent rect. 2 19
179 208.67 radiation 1 43200 < th dose dependent rect. 18 9
188 208.70 radiation 1 43200 < th dose dependent no NA NA
189 208.70 radiation 1 43200 < th dose dependent rect. 22 21
194 208.70 radiation 1 43200 < th dose dependent rect. 16 23
203 208.80 radiation 1 43200 < th dose dependent rect. 18 13
206 208.82 temperature 25 43200 < th dose independent rect. 17 1
224 209.07 radiation 1 43200 > th dose independent rect. 18 1
259 209.66 temperature 25 43200 > th dose independent rect. 17 1
270 210.05 humidity 90 43200 > th dose dependent rect. 22 2
296 210.71 radiation 1 43200 < th dose independent rect. 18 3
297 210.71 temperature 20 43200 < th dose independent rect. 22 19
299 210.73 temperature 20 43200 < th dose independent rect. 5 3
300 210.73 radiation 1 43200 < th dose independent rect. 18 5
303 210.77 temperature 20 43200 < th dose dependent rect. 4 2
304 210.78 temperature 20 43200 < th dose independent rect. 5 1
306 210.79 radiation 1 43200 < th dose independent rect. 18 1
310 210.81 radiation 1 43200 < th dose independent rect. 18 10
328 210.99 temperature 20 43200 > th dose independent rect. 22 18
331 211.04 humidity 90 43200 > th dose dependent rect. 20 5
345 211.17 temperature 20 43200 > th dose independent rect. 5 3
350 211.19 temperature 20 43200 < th dose independent rect. 11 20
369 211.27 temperature 20 43200 < th dose independent sin 5 NA
410 211.42 temperature 20 43200 < th dose independent rect. 4 22
413 211.42 humidity 90 43200 > th dose dependent rect. 14 11
433 211.52 temperature 20 43200 < th dose independent no NA NA
440 211.53 temperature 20 43200 > th dose independent rect. 11 20
465 211.59 temperature 20 43200 > th dose independent sin 5 NA
494 211.68 temperature 20 43200 < th dose independent rect. 1 23
553 211.81 temperature 20 43200 > th dose independent rect. 4 23
573 211.87 temperature 20 43200 > th dose independent no NA NA
587 211.90 temperature 20 43200 < th dose independent rect. 4 12
635 212.02 temperature 20 43200 > th dose independent rect. 1 23
684 212.14 radiation 1 43200 > th dose independent rect. 7 12
704 212.17 temperature 20 43200 > th dose independent rect. 4 12
707 212.18 temperature 20 43200 < th dose independent sin 13 NA
779 212.35 radiation 1 43200 < th dose independent rect. 7 14
789 212.37 radiation 1 43200 < th dose independent rect. 7 12
793 212.37 radiation 1 43200 < th dose independent rect. 7 20
821 212.45 radiation 1 43200 < th dose dependent rect. 1 4
830 212.48 temperature 20 43200 > th dose independent sin 12 NA
871 212.59 radiation 1 43200 < th dose dependent rect. 3 2
934 212.79 temperature 20 43200 > th dose independent rect. 23 1