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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0514700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.09 (0.033) R2 : 0.617
β1 : 1.56 (0.123) R2dD : 0.145 R2D : 0.155
β2 : 1.21 (0.0916) R2dC : 0.177 R2C : 0.283
β3 : 1.38 (0.127) R2dE : 0.126 R2E : 0.295
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.372 (0.0719) R2dN8 : 0.0318 R2N8 : 0.0171
σ : 0.614
deviance : 174.08
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_____
C
peak time of C : 20
E
wheather : temperature
threshold : 23.53
memory length : 289
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
161.07 0.596 4.06 1.97 1.33 1.11 1.83 2.08 0.459 20 22.18 250 -- --
163.29 0.595 4.09 1.62 1.27 1.28 1.92 -- 0.373 20 23.3 257 -- --
169.86 0.607 4.03 2.07 1.3 1.07 -- 2.7 0.506 19.7 22.15 332 -- --
174.08 0.614 4.09 1.56 1.21 1.38 -- -- 0.372 20 23.53 289 -- --
227.07 0.702 4.06 1.81 -- 1.8 -- 2.67 0.319 -- 23.91 504 -- --
191.84 0.649 4.06 1.87 1.71 -- 2.45 -- 0.549 19.1 -- -- -- --
207.67 0.675 4.06 1.82 1.71 -- -- -- 0.555 19 -- -- -- --
224.82 0.698 4.07 1.4 -- 2.18 -- -- 0.304 -- 24.2 479 -- --
233.37 0.711 4.14 -- 1.13 1.79 -- -- 0.125 20.6 22.6 274 -- --
361.96 0.889 4.02 1.79 -- -- -- -- 0.524 -- -- -- -- --
295.34 0.804 4.11 -- 1.69 -- -- -- 0.351 19.1 -- -- -- --
273.64 0.77 4.12 -- -- 2.42 -- -- 0.0974 -- 23.76 503 -- --
446.49 0.986 4.07 -- -- -- -- -- 0.325 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 160.17 temperature 25 4320 < th dose dependent rect. 24 1
2 160.17 temperature 10 270 > th dose dependent rect. 19 23
3 160.23 temperature 25 4320 < th dose dependent rect. 23 3
7 160.30 temperature 20 10 > th dose dependent rect. 22 22
9 160.31 temperature 20 720 > th dose dependent rect. 21 18
11 160.32 temperature 20 10 > th dose dependent rect. 7 23
21 160.58 temperature 15 4320 > th dose dependent rect. 21 7
31 160.63 temperature 20 270 > th dose dependent rect. 21 20
60 160.84 temperature 20 1440 > th dose dependent rect. 21 12
62 160.85 temperature 20 1440 > th dose dependent rect. 24 9
85 160.96 temperature 10 4320 > th dose dependent rect. 1 1
89 160.97 temperature 10 4320 > th dose dependent rect. 24 3
174 161.22 temperature 15 4320 > th dose dependent rect. 22 1
182 161.25 temperature 20 4320 < th dose independent rect. 20 7
221 161.35 temperature 20 1440 > th dose dependent sin 10 NA
234 161.39 temperature 20 4320 > th dose independent rect. 20 7
288 161.51 temperature 10 1440 > th dose dependent rect. 24 9
316 161.56 temperature 25 4320 < th dose dependent sin 12 NA
323 161.57 temperature 10 1440 > th dose dependent sin 10 NA
343 161.59 temperature 30 1440 < th dose dependent rect. 24 9
391 161.67 temperature 20 1440 > th dose dependent rect. 4 3
420 161.72 temperature 20 720 > th dose dependent sin 6 NA
523 161.87 temperature 20 4320 < th dose independent rect. 16 12
700 162.06 temperature 20 4320 > th dose independent rect. 14 14
710 162.07 temperature 20 4320 > th dose independent rect. 16 12
736 162.09 temperature 20 10 > th dose dependent rect. 13 23
994 162.40 temperature 20 4320 < th dose independent sin 15 NA