Os01g0513200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Mitochondrial substrate carrier family protein.
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Os01g0513200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Mitochondrial substrate carrier family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25.54 | 0.237 | 10.4 | 0.29 | 0.618 | -0.324 | 0.317 | 0.994 | 0.204 | 5.45 | 22.23 | 757 | -- | -- |
| 28.12 | 0.247 | 10.4 | 0.0784 | 0.653 | -0.441 | 0.162 | -- | 0.142 | 5.13 | 21.34 | 860 | -- | -- |
| 25.75 | 0.236 | 10.4 | 0.278 | 0.626 | -0.334 | -- | 0.939 | 0.202 | 5.41 | 22.2 | 823 | -- | -- |
| 27.82 | 0.246 | 10.4 | 0.0244 | 0.632 | -0.418 | -- | -- | 0.126 | 5.36 | 21.23 | 856 | -- | -- |
| 44.99 | 0.312 | 10.4 | 0.23 | -- | -0.401 | -- | 0.648 | 0.197 | -- | 21.7 | 568 | -- | -- |
| 33.43 | 0.271 | 10.5 | -0.139 | 0.65 | -- | 0.0453 | -- | 0.0159 | 5.78 | -- | -- | -- | -- |
| 33.44 | 0.271 | 10.5 | -0.138 | 0.65 | -- | -- | -- | 0.0157 | 5.78 | -- | -- | -- | -- |
| 46.16 | 0.316 | 10.4 | 0.0285 | -- | -0.488 | -- | -- | 0.156 | -- | 21.2 | 511 | -- | -- |
| 27.83 | 0.246 | 10.4 | -- | 0.63 | -0.412 | -- | -- | 0.125 | 5.38 | 21.27 | 852 | -- | -- |
| 55.38 | 0.348 | 10.5 | -0.118 | -- | -- | -- | -- | 0.031 | -- | -- | -- | -- | -- |
| 33.94 | 0.273 | 10.5 | -- | 0.648 | -- | -- | -- | 0.0311 | 5.79 | -- | -- | -- | -- |
| 46.21 | 0.317 | 10.5 | -- | -- | -0.478 | -- | -- | 0.151 | -- | 21.2 | 514 | -- | -- |
| 55.75 | 0.349 | 10.5 | -- | -- | -- | -- | -- | 0.0441 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 25.27 | temperature | 20 | 90 | > th | dose dependent | rect. | 1 | 17 |
| 2 | 25.39 | temperature | 10 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 4 | 25.42 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 17 |
| 9 | 25.56 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 15 | 25.65 | temperature | 20 | 720 | > th | dose dependent | sin | 8 | NA |
| 22 | 25.74 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 28 | 25.77 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 37 | 25.84 | temperature | 25 | 720 | < th | dose dependent | rect. | 16 | 20 |
| 55 | 25.91 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 21 |
| 102 | 26.01 | temperature | 25 | 90 | > th | dose independent | rect. | 1 | 17 |
| 103 | 26.01 | temperature | 20 | 270 | > th | dose dependent | sin | 4 | NA |
| 184 | 26.13 | temperature | 15 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 221 | 26.21 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 231 | 26.22 | temperature | 25 | 720 | < th | dose dependent | sin | 11 | NA |
| 274 | 26.30 | temperature | 15 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 323 | 26.39 | temperature | 10 | 270 | > th | dose dependent | rect. | 8 | 23 |
| 329 | 26.40 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 353 | 26.44 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |
| 362 | 26.44 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 363 | 26.45 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 400 | 26.49 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 497 | 26.62 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 547 | 26.68 | temperature | 15 | 270 | > th | dose dependent | rect. | 4 | 23 |
| 584 | 26.73 | temperature | 20 | 90 | > th | dose dependent | rect. | 6 | 12 |
| 649 | 26.79 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 742 | 26.89 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 6 |
| 759 | 26.90 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 4 |
| 774 | 26.91 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 799 | 26.93 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 20 |
| 833 | 26.96 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 8 |
| 846 | 26.97 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 19 |
| 877 | 26.99 | temperature | 30 | 90 | < th | dose dependent | sin | 23 | NA |
| 888 | 26.99 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 941 | 27.04 | temperature | 20 | 720 | < th | dose independent | rect. | 22 | 19 |