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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0511800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.29 (0.0352) R2 : 0.583
β1 : -0.977 (0.164) R2dD : 0.058 R2D : 0.216
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.24 (0.223) R2dE : 0.356 R2E : 0.526
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0704 (0.082) R2dN8 : 0.00114 R2N8 : 0.00765
σ : 0.638
deviance : 187.91
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 20.73
memory length : 6403
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
177.54 0.626 3.17 -0.772 0.17 1.8 -1.59 -3.5 0.0471 6.9 23.04 6491 -- --
181.76 0.628 3.28 -0.877 0.205 3.17 -2.15 -- 0.00164 6.98 21.15 5808 -- --
183.99 0.632 3.17 -0.808 0.167 1.83 -- -3.46 0.0426 7.07 22.77 6466 -- --
186.55 0.636 3.29 -0.984 0.16 3.24 -- -- -0.0751 6.91 20.72 6401 -- --
185.4 0.634 3.17 -0.818 -- 1.86 -- -3.36 0.038 -- 22.67 6462 -- --
266.37 0.765 3.41 -2.48 0.185 -- -1.59 -- -0.624 7.26 -- -- -- --
273.09 0.774 3.41 -2.51 0.184 -- -- -- -0.62 8.1 -- -- -- --
187.91 0.638 3.29 -0.977 -- 3.24 -- -- -0.0704 -- 20.73 6403 -- --
201.07 0.66 3.24 -- 0.127 3.99 -- -- 0.153 7.87 21.1 6466 -- --
274.95 0.775 3.41 -2.51 -- -- -- -- -0.617 -- -- -- -- --
439.4 0.981 3.35 -- 0.175 -- -- -- -0.34 9.14 -- -- -- --
202.14 0.662 3.24 -- -- 4 -- -- 0.162 -- 21.11 6470 -- --
441.18 0.98 3.35 -- -- -- -- -- -0.339 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 172.11 humidity 90 43200 < th dose dependent rect. 6 3
2 172.47 humidity 70 43200 < th dose dependent rect. 7 2
3 172.76 humidity 70 43200 > th dose independent rect. 6 1
6 172.96 humidity 60 43200 < th dose dependent rect. 7 4
16 173.36 humidity 70 43200 < th dose independent rect. 6 1
21 173.74 humidity 60 43200 < th dose dependent rect. 20 15
34 174.29 humidity 60 43200 < th dose independent rect. 6 4
36 174.33 humidity 50 43200 > th dose dependent rect. 6 3
57 174.70 humidity 50 43200 < th dose independent rect. 20 15
80 175.12 humidity 50 43200 > th dose independent rect. 20 15
106 175.52 humidity 50 43200 > th dose dependent rect. 5 5
113 175.63 temperature 20 4320 < th dose dependent rect. 3 1
146 176.01 temperature 20 4320 < th dose dependent rect. 1 4
160 176.15 humidity 60 43200 < th dose dependent sin 9 NA
163 176.22 humidity 50 43200 > th dose dependent rect. 4 7
169 176.30 humidity 50 43200 > th dose independent rect. 2 9
172 176.31 humidity 90 43200 < th dose dependent rect. 4 19
173 176.32 humidity 50 43200 > th dose independent rect. 24 11
190 176.38 humidity 70 43200 < th dose dependent rect. 20 1
192 176.38 humidity 90 43200 < th dose dependent rect. 4 12
205 176.46 humidity 90 43200 < th dose dependent sin 2 NA
306 176.81 humidity 60 43200 > th dose independent rect. 15 18
310 176.82 humidity 60 43200 < th dose independent rect. 15 18
322 176.87 humidity 90 43200 < th dose dependent rect. 20 1
343 176.92 humidity 90 43200 < th dose dependent rect. 15 21
494 177.37 humidity 90 43200 < th dose dependent no NA NA
527 177.42 humidity 90 43200 < th dose dependent rect. 20 23
687 177.68 humidity 60 43200 > th dose independent sin 13 NA
698 177.69 humidity 90 43200 < th dose dependent rect. 19 3
704 177.69 humidity 80 43200 < th dose dependent rect. 10 23
707 177.70 humidity 60 43200 < th dose independent sin 13 NA
754 177.76 humidity 60 43200 < th dose dependent rect. 15 1
865 177.93 humidity 50 43200 > th dose independent sin 10 NA
895 177.98 humidity 90 43200 < th dose dependent rect. 17 6
936 178.03 humidity 60 43200 > th dose independent rect. 17 7
944 178.05 humidity 50 43200 > th dose dependent rect. 20 1
981 178.11 humidity 60 43200 < th dose independent sin 6 NA
988 178.12 humidity 60 43200 > th dose independent rect. 16 11
991 178.12 humidity 70 43200 < th dose dependent rect. 15 9