Os01g0511700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os01g0511700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 54.25 | 0.346 | 8.91 | -1.22 | 0.794 | -0.654 | 0.458 | -1.4 | -0.207 | 2.63 | 24.85 | 48 | -- | -- |
| 56.7 | 0.353 | 8.94 | -1.42 | 0.781 | -0.523 | -0.022 | -- | -0.252 | 2.68 | 25.1 | 22 | -- | -- |
| 54.66 | 0.344 | 8.91 | -1.24 | 0.779 | -0.631 | -- | -1.28 | -0.208 | 2.83 | 24.8 | 154 | -- | -- |
| 56.7 | 0.353 | 8.94 | -1.42 | 0.781 | -0.523 | -- | -- | -0.252 | 2.68 | 25.1 | 22 | -- | -- |
| 81.05 | 0.419 | 8.91 | -1.21 | -- | -0.616 | -- | -1.22 | -0.206 | -- | 27.9 | 1064 | -- | -- |
| 60.8 | 0.366 | 8.91 | -1.3 | 0.681 | -- | -0.0425 | -- | -0.148 | 2.89 | -- | -- | -- | -- |
| 60.8 | 0.365 | 8.91 | -1.3 | 0.681 | -- | -- | -- | -0.148 | 2.88 | -- | -- | -- | -- |
| 82.67 | 0.423 | 8.93 | -1.43 | -- | -0.541 | -- | -- | -0.224 | -- | 44.02 | 1103 | -- | -- |
| 73.7 | 0.4 | 8.84 | -- | 0.669 | 0.955 | -- | -- | 0.196 | 2.78 | 20 | 47520 | -- | -- |
| 87.57 | 0.437 | 8.91 | -1.27 | -- | -- | -- | -- | -0.13 | -- | -- | -- | -- | -- |
| 105.4 | 0.48 | 8.88 | -- | 0.655 | -- | -- | -- | -0.00288 | 2.87 | -- | -- | -- | -- |
| 100.78 | 0.468 | 8.84 | -- | -- | 0.926 | -- | -- | 0.193 | -- | 19.6 | 47520 | -- | -- |
| 130.24 | 0.533 | 8.88 | -- | -- | -- | -- | -- | 0.0109 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 51.67 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 21 | 10 |
| 5 | 52.28 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 6 | 52.28 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 7 | 52.44 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 10 | 6 |
| 12 | 52.55 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 9 | 7 |
| 16 | 52.60 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 13 | 3 |
| 19 | 52.62 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 15 | 1 |
| 21 | 52.72 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 11 | 19 |
| 48 | 53.30 | temperature | 30.0 | 270 | < th | dose dependent | sin | 10 | NA |
| 62 | 53.44 | temperature | 20.0 | 270 | > th | dose dependent | sin | 10 | NA |
| 77 | 53.53 | temperature | 30.0 | 90 | < th | dose dependent | sin | 8 | NA |
| 81 | 53.54 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 18 | 11 |
| 94 | 53.59 | wind | 5.0 | 4320 | < th | dose independent | rect. | 24 | 1 |
| 104 | 53.63 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 8 |
| 117 | 53.67 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 1 | 3 |
| 125 | 53.69 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 1 | 3 |
| 129 | 53.71 | temperature | 10.0 | 270 | > th | dose dependent | sin | 11 | NA |
| 139 | 53.74 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 148 | 53.80 | wind | 5.0 | 4320 | > th | dose independent | rect. | 24 | 1 |
| 153 | 53.83 | temperature | 25.0 | 720 | < th | dose independent | rect. | 20 | 1 |
| 159 | 53.87 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 209 | 54.01 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 20 | 23 |
| 226 | 54.05 | wind | 7.0 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 229 | 54.05 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 23 | 20 |
| 241 | 54.09 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 6 | 7 |
| 246 | 54.09 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 17 | 18 |
| 306 | 54.20 | wind | 7.0 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 314 | 54.21 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 20 | 12 |
| 322 | 54.23 | wind | 9.0 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 329 | 54.24 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 15 | 2 |
| 337 | 54.26 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 23 | 14 |
| 342 | 54.27 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 350 | 54.28 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 362 | 54.30 | temperature | 25.0 | 30 | < th | dose dependent | no | NA | NA |
| 372 | 54.31 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 373 | 54.31 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 374 | 54.31 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 421 | 54.40 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 427 | 54.41 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 433 | 54.42 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 6 | 2 |
| 447 | 54.43 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 493 | 54.50 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 24 | 7 |
| 497 | 54.52 | wind | 9.0 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 500 | 54.52 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 513 | 54.54 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 21 | 11 |
| 524 | 54.54 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 9 | 20 |
| 528 | 54.55 | temperature | 20.0 | 10 | > th | dose independent | rect. | 18 | 20 |
| 537 | 54.56 | wind | 7.0 | 4320 | < th | dose independent | rect. | 15 | 3 |
| 538 | 54.56 | temperature | 25.0 | 720 | > th | dose independent | rect. | 15 | 14 |
| 548 | 54.56 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 562 | 54.59 | wind | 3.0 | 1440 | > th | dose independent | rect. | 2 | 1 |
| 602 | 54.64 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 611 | 54.65 | wind | 7.0 | 720 | > th | dose independent | rect. | 19 | 14 |
| 629 | 54.68 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 10 | 1 |
| 644 | 54.69 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 10 | 1 |
| 645 | 54.69 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 6 | 2 |
| 657 | 54.69 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 24 | 19 |
| 660 | 54.70 | wind | 7.0 | 720 | > th | dose independent | rect. | 19 | 10 |
| 664 | 54.70 | atmosphere | 1015.0 | 14400 | > th | dose dependent | rect. | 23 | 2 |
| 678 | 54.71 | atmosphere | 1015.0 | 14400 | > th | dose independent | rect. | 14 | 9 |
| 682 | 54.71 | atmosphere | 1015.0 | 14400 | > th | dose dependent | rect. | 20 | 8 |
| 688 | 54.72 | atmosphere | 1015.0 | 14400 | > th | dose independent | rect. | 19 | 2 |
| 690 | 54.72 | atmosphere | 1015.0 | 14400 | < th | dose independent | rect. | 17 | 4 |
| 691 | 54.72 | atmosphere | 1015.0 | 14400 | > th | dose independent | rect. | 16 | 6 |
| 692 | 54.72 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 6 | 7 |
| 698 | 54.72 | temperature | 25.0 | 720 | < th | dose independent | rect. | 14 | 16 |
| 699 | 54.72 | temperature | 20.0 | 30 | > th | dose independent | rect. | 18 | 18 |
| 701 | 54.72 | atmosphere | 1015.0 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 711 | 54.73 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 712 | 54.73 | wind | 7.0 | 1440 | < th | dose independent | rect. | 22 | 3 |
| 714 | 54.73 | atmosphere | 1015.0 | 14400 | < th | dose independent | rect. | 15 | 7 |
| 748 | 54.74 | atmosphere | 1015.0 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 756 | 54.74 | wind | 5.0 | 1440 | > th | dose independent | rect. | 23 | 10 |
| 764 | 54.74 | wind | 3.0 | 1440 | > th | dose dependent | rect. | 24 | 3 |
| 785 | 54.75 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 5 | 13 |
| 788 | 54.75 | atmosphere | 1015.0 | 14400 | > th | dose dependent | sin | 13 | NA |
| 789 | 54.75 | wind | 5.0 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 796 | 54.75 | wind | 7.0 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 800 | 54.76 | atmosphere | 1015.0 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 822 | 54.76 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 3 | 2 |
| 832 | 54.77 | wind | 9.0 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 846 | 54.77 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 18 |
| 866 | 54.78 | wind | 5.0 | 720 | < th | dose independent | rect. | 23 | 6 |
| 867 | 54.78 | wind | 5.0 | 1440 | < th | dose independent | rect. | 23 | 10 |
| 873 | 54.78 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 877 | 54.78 | wind | 5.0 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 895 | 54.79 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 11 |
| 919 | 54.80 | atmosphere | 1015.0 | 14400 | > th | dose independent | sin | 18 | NA |
| 921 | 54.80 | temperature | 25.0 | 720 | > th | dose independent | rect. | 18 | 1 |
| 925 | 54.80 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 14 | 8 |
| 939 | 54.80 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 18 | 5 |
| 964 | 54.81 | wind | 5.0 | 720 | > th | dose independent | rect. | 1 | 4 |
| 977 | 54.81 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 11 | 18 |
| 989 | 54.81 | atmosphere | 1015.0 | 14400 | > th | dose dependent | rect. | 8 | 16 |