Os01g0510800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : TATA box binding protein associated factor (TAF) domain containing protein.
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Os01g0510800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : TATA box binding protein associated factor (TAF) domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 11.49 | 0.159 | 12.3 | 0.0179 | 0.151 | 0.412 | 0.0495 | 0.262 | 0.262 | 24 | 61.2 | 4160 | -- | -- |
| 11.57 | 0.158 | 12.3 | 0.0386 | 0.148 | 0.42 | 0.0358 | -- | 0.267 | 0.000644 | 60.99 | 4160 | -- | -- |
| 11.5 | 0.158 | 12.3 | 0.0173 | 0.147 | 0.419 | -- | 0.252 | 0.269 | 0.0751 | 62 | 4172 | -- | -- |
| 11.57 | 0.158 | 12.3 | 0.0339 | 0.153 | 0.423 | -- | -- | 0.275 | 0.0621 | 63 | 4162 | -- | -- |
| 12.74 | 0.166 | 12.3 | -0.0122 | -- | 0.352 | -- | 0.192 | 0.254 | -- | 61.86 | 7391 | -- | -- |
| 13.78 | 0.174 | 12.3 | 0.0722 | 0.137 | -- | 0.0129 | -- | 0.162 | 0.027 | -- | -- | -- | -- |
| 13.78 | 0.174 | 12.3 | 0.0717 | 0.137 | -- | -- | -- | 0.162 | 0.0597 | -- | -- | -- | -- |
| 12.76 | 0.166 | 12.3 | 0.0353 | -- | 0.339 | -- | -- | 0.262 | -- | 65 | 7389 | -- | -- |
| 11.6 | 0.159 | 12.3 | -- | 0.149 | 0.429 | -- | -- | 0.278 | 0.0628 | 63.27 | 4168 | -- | -- |
| 14.96 | 0.181 | 12.3 | 0.076 | -- | -- | -- | -- | 0.164 | -- | -- | -- | -- | -- |
| 13.91 | 0.174 | 12.3 | -- | 0.138 | -- | -- | -- | 0.154 | 0.0889 | -- | -- | -- | -- |
| 12.72 | 0.166 | 12.3 | -- | -- | 0.35 | -- | -- | 0.281 | -- | 68 | 7380 | -- | -- |
| 15.11 | 0.181 | 12.3 | -- | -- | -- | -- | -- | 0.156 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 10.49 | humidity | 70 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 2 | 10.68 | humidity | 70 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 5 | 10.89 | wind | 3 | 43200 | < th | dose dependent | rect. | 4 | 2 |
| 6 | 10.90 | humidity | 70 | 4320 | < th | dose independent | rect. | 11 | 5 |
| 7 | 10.91 | humidity | 70 | 4320 | > th | dose independent | rect. | 10 | 6 |
| 12 | 10.93 | humidity | 60 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 14 | 10.95 | humidity | 80 | 14400 | > th | dose independent | rect. | 9 | 2 |
| 16 | 10.96 | humidity | 60 | 4320 | > th | dose dependent | rect. | 10 | 5 |
| 17 | 10.97 | humidity | 60 | 4320 | > th | dose dependent | rect. | 11 | 3 |
| 24 | 11.02 | humidity | 80 | 14400 | < th | dose independent | rect. | 9 | 2 |
| 27 | 11.03 | humidity | 70 | 4320 | < th | dose independent | rect. | 11 | 2 |
| 36 | 11.06 | humidity | 70 | 4320 | > th | dose independent | rect. | 11 | 2 |
| 45 | 11.09 | wind | 1 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 49 | 11.10 | humidity | 80 | 14400 | > th | dose independent | rect. | 9 | 15 |
| 65 | 11.13 | humidity | 70 | 4320 | > th | dose dependent | rect. | 10 | 1 |
| 84 | 11.17 | humidity | 90 | 14400 | < th | dose independent | rect. | 6 | 2 |
| 90 | 11.18 | wind | 1 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 94 | 11.18 | humidity | 80 | 14400 | > th | dose independent | rect. | 13 | 10 |
| 98 | 11.19 | wind | 1 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 100 | 11.19 | humidity | 80 | 14400 | < th | dose independent | rect. | 9 | 14 |
| 114 | 11.20 | humidity | 80 | 14400 | > th | dose dependent | rect. | 7 | 3 |
| 143 | 11.23 | humidity | 80 | 14400 | > th | dose independent | sin | 18 | NA |
| 158 | 11.24 | humidity | 70 | 4320 | > th | dose independent | rect. | 10 | 10 |
| 179 | 11.24 | wind | 9 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 222 | 11.27 | humidity | 80 | 14400 | < th | dose independent | rect. | 13 | 10 |
| 279 | 11.29 | humidity | 80 | 14400 | > th | dose independent | rect. | 21 | 22 |
| 286 | 11.30 | humidity | 80 | 14400 | < th | dose independent | sin | 19 | NA |
| 309 | 11.31 | radiation | 40 | 4320 | < th | dose independent | rect. | 9 | 2 |
| 331 | 11.32 | radiation | 40 | 4320 | > th | dose independent | rect. | 9 | 2 |
| 394 | 11.33 | humidity | 80 | 14400 | > th | dose independent | rect. | 13 | 23 |
| 405 | 11.34 | humidity | 80 | 14400 | > th | dose independent | no | NA | NA |
| 424 | 11.34 | radiation | 40 | 4320 | < th | dose independent | rect. | 15 | 20 |
| 428 | 11.34 | humidity | 80 | 14400 | > th | dose independent | rect. | 17 | 23 |
| 431 | 11.34 | radiation | 30 | 4320 | > th | dose dependent | rect. | 9 | 1 |
| 473 | 11.35 | humidity | 70 | 4320 | > th | dose dependent | sin | 23 | NA |
| 513 | 11.36 | humidity | 90 | 14400 | < th | dose dependent | rect. | 15 | 1 |
| 532 | 11.37 | humidity | 90 | 14400 | > th | dose independent | rect. | 6 | 2 |
| 575 | 11.38 | radiation | 40 | 4320 | < th | dose independent | rect. | 7 | 4 |
| 625 | 11.38 | humidity | 90 | 4320 | < th | dose dependent | rect. | 13 | 3 |
| 746 | 11.40 | humidity | 90 | 4320 | < th | dose dependent | rect. | 13 | 1 |
| 762 | 11.40 | humidity | 60 | 4320 | > th | dose dependent | rect. | 2 | 14 |
| 770 | 11.40 | humidity | 60 | 4320 | > th | dose dependent | rect. | 9 | 16 |
| 802 | 11.41 | humidity | 70 | 4320 | < th | dose independent | rect. | 19 | 21 |
| 819 | 11.41 | humidity | 80 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 822 | 11.41 | wind | 3 | 43200 | < th | dose dependent | rect. | 1 | 5 |
| 995 | 11.44 | humidity | 80 | 14400 | < th | dose independent | no | NA | NA |