Os01g0509400 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0509400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	2.65	(0.113)	R²	:	0.163
β₁	:	-1.98	(0.376)	R²_dD	:	0.271	R²_D	:	-0.616
β₂	:	0.576	(0.12)	R²_dC	:	0.0442	R²_C	:	-0.327
β₃	:	49.9	(9.46)	R²_dE	:	30	R²_E	:	-32.7
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	177	(32.3)	R²_dD*E	:	32.3	R²_D*E	:	-29.5
γ₁	:	0.0799	(0.0971)	R²_dN8	:	0.00168	R²_N8	:	-0.385
σ	:	0.846
deviance	:	329.88
__

_____

C
peak time of C	:	6.74
E
wheather	:	atmosphere
threshold	:	995
memory length	:	4320
response mode	:	> th
dose dependency	:	dose independent
G
type of G	:	rect.
peak or start time of G	:	5.05
open length of G	:	0.9

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
329.79	0.853	2.65	-1.97	0.576	49.9	-0.187	177	0.0794	6.77	995	4320	5.05	0.897
352.01	0.881	3.24	-0.274	0.546	0.958	-0.174	--	-0.0373	7.26	995	4369	4.77	0.997
329.88	0.846	2.65	-1.98	0.576	49.9	--	177	0.0799	6.74	995	4320	5.05	0.9
351.45	0.873	3.23	-0.265	0.549	0.967	--	--	-0.0267	6.92	993.9	4328	4.78	1.03
346.99	0.868	2.66	-1.96	--	50	--	177	0.0922	--	995	4320	5.06	0.795
367.01	0.898	3.22	-0.246	0.703	--	0.0307	--	0.0044	6.71	--	--	--	--
367.01	0.897	3.22	-0.245	0.703	--	--	--	0.00434	6.72	--	--	--	--
363.76	0.892	3.23	-0.285	--	1.73	--	--	0.0605	--	995	4320	5.06	0.795
353.4	0.876	3.23	--	0.54	0.953	--	--	-0.00778	7.22	993.9	4330	4.78	1.02
392.8	0.926	3.24	-0.229	--	--	--	--	0.0182	--	--	--	--	--
368.6	0.898	3.22	--	0.7	--	--	--	0.0316	6.74	--	--	--	--
365.9	0.894	3.22	--	--	1.71	--	--	0.0914	--	995	4320	5.06	0.795
394.19	0.927	3.23	--	--	--	--	--	0.0436	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	334.07	atmosphere	995.0	4320	> th	dose independent	rect.	5	1
2	334.80	radiation	1.0	10	< th	dose dependent	rect.	5	13
5	337.92	radiation	1.0	10	< th	dose dependent	rect.	11	7
9	337.94	atmosphere	1005.0	30	> th	dose independent	rect.	17	1
10	337.98	radiation	1.0	10	< th	dose dependent	rect.	13	5
12	338.00	radiation	1.0	10	< th	dose dependent	rect.	15	3
17	338.61	wind	5.0	90	> th	dose dependent	rect.	1	7
18	339.05	wind	3.0	90	< th	dose independent	rect.	17	1
19	340.16	wind	5.0	90	< th	dose dependent	rect.	16	2
20	340.26	temperature	25.0	30	< th	dose independent	rect.	24	11
22	340.40	wind	3.0	90	> th	dose dependent	rect.	24	9
29	341.57	wind	5.0	90	> th	dose independent	rect.	24	9
30	341.59	radiation	1.0	30	< th	dose independent	rect.	16	2
43	342.00	atmosphere	995.0	4320	> th	dose independent	rect.	5	6
53	342.45	wind	5.0	270	< th	dose dependent	rect.	14	4
64	342.92	precipitation	0.1	4320	> th	dose independent	rect.	1	1
65	342.92	precipitation	0.1	4320	> th	dose dependent	rect.	1	1
69	343.15	precipitation	0.1	4320	< th	dose independent	rect.	1	1
70	343.15	precipitation	0.1	4320	< th	dose dependent	rect.	1	1
77	343.39	radiation	1.0	10	< th	dose independent	rect.	5	13
79	343.50	atmosphere	995.0	4320	> th	dose independent	rect.	2	9
83	343.59	wind	5.0	270	< th	dose independent	rect.	14	4
90	343.99	temperature	30.0	30	< th	dose independent	rect.	17	1
93	344.05	radiation	1.0	30	< th	dose independent	rect.	11	7
100	344.09	humidity	70.0	90	> th	dose independent	rect.	16	1
101	344.21	radiation	30.0	4320	> th	dose dependent	rect.	16	16
110	344.61	radiation	30.0	4320	> th	dose dependent	rect.	7	1
132	344.74	wind	1.0	720	< th	dose independent	rect.	4	1
143	345.07	humidity	50.0	10	> th	dose dependent	rect.	17	1
144	345.12	radiation	30.0	4320	< th	dose independent	rect.	6	1
179	346.00	atmosphere	995.0	4320	> th	dose independent	rect.	2	4
209	346.43	wind	9.0	4320	> th	dose independent	rect.	21	2
211	346.43	wind	9.0	4320	> th	dose dependent	rect.	21	3
213	346.44	wind	9.0	4320	> th	dose dependent	rect.	22	1
229	346.51	temperature	25.0	30	< th	dose independent	rect.	4	7
253	346.67	radiation	40.0	1440	< th	dose independent	rect.	16	5
265	346.78	radiation	40.0	1440	< th	dose independent	rect.	16	3
281	346.88	atmosphere	1005.0	10	> th	dose independent	rect.	4	6
284	346.90	wind	1.0	90	< th	dose independent	rect.	4	1
291	346.98	wind	7.0	90	> th	dose independent	rect.	22	11
302	347.20	wind	3.0	10	> th	dose independent	rect.	24	10
309	347.22	wind	7.0	90	> th	dose independent	rect.	22	7
326	347.30	wind	1.0	90	< th	dose dependent	rect.	4	1
328	347.32	radiation	1.0	10	< th	dose dependent	sin	23	NA
330	347.33	atmosphere	1000.0	10	> th	dose dependent	rect.	4	6
344	347.47	wind	1.0	720	< th	dose dependent	rect.	4	1
352	347.57	wind	7.0	90	> th	dose dependent	rect.	22	7
362	347.60	temperature	20.0	30	> th	dose independent	rect.	4	14
367	347.63	radiation	30.0	10	< th	dose independent	rect.	4	6
368	347.63	radiation	30.0	4320	< th	dose independent	rect.	23	8
369	347.63	humidity	90.0	4320	> th	dose dependent	rect.	12	1
380	347.76	wind	1.0	1440	> th	dose independent	rect.	4	1
382	347.76	atmosphere	1000.0	1440	< th	dose independent	rect.	17	2
385	347.77	temperature	20.0	10	> th	dose independent	rect.	1	9
388	347.81	atmosphere	1000.0	30	> th	dose dependent	rect.	17	1
390	347.82	wind	3.0	10	> th	dose dependent	rect.	1	3
404	347.87	atmosphere	1000.0	1440	> th	dose independent	rect.	18	1
435	347.99	atmosphere	1005.0	10	< th	dose dependent	rect.	10	2
436	347.99	atmosphere	1005.0	10	< th	dose dependent	rect.	10	15
437	348.00	radiation	30.0	10	> th	dose independent	rect.	11	1
439	348.01	atmosphere	1000.0	1440	> th	dose independent	rect.	17	3
450	348.07	radiation	40.0	270	< th	dose dependent	rect.	14	4
452	348.08	radiation	30.0	4320	< th	dose independent	rect.	19	12
471	348.16	radiation	20.0	10	> th	dose dependent	rect.	11	1
478	348.18	atmosphere	1005.0	90	< th	dose dependent	rect.	10	3
490	348.24	wind	5.0	90	> th	dose independent	rect.	24	1
520	348.34	atmosphere	995.0	4320	> th	dose independent	rect.	22	13
527	348.40	atmosphere	1005.0	30	> th	dose independent	rect.	4	14
540	348.45	wind	5.0	90	> th	dose dependent	rect.	24	1
545	348.46	atmosphere	1000.0	30	> th	dose independent	rect.	1	10
555	348.48	radiation	40.0	4320	> th	dose independent	rect.	7	1
589	348.50	temperature	25.0	30	> th	dose independent	sin	7	NA
635	348.75	atmosphere	995.0	14400	> th	dose independent	rect.	2	1
637	348.75	wind	3.0	10	> th	dose dependent	rect.	1	1
659	348.82	wind	3.0	30	< th	dose dependent	rect.	22	6
660	348.83	precipitation	0.1	270	> th	dose independent	rect.	22	1
664	348.83	precipitation	0.1	270	> th	dose dependent	rect.	22	1
673	348.87	wind	3.0	270	< th	dose dependent	rect.	14	1
706	348.97	temperature	20.0	10	> th	dose independent	rect.	4	6
712	348.99	radiation	30.0	270	< th	dose independent	rect.	13	5
715	348.99	wind	3.0	30	< th	dose dependent	rect.	7	21
720	349.03	atmosphere	995.0	4320	> th	dose independent	rect.	20	10
728	349.05	atmosphere	995.0	4320	> th	dose independent	rect.	22	8
761	349.14	atmosphere	1000.0	1440	< th	dose dependent	rect.	17	1
780	349.20	wind	7.0	4320	< th	dose independent	rect.	23	1
789	349.21	atmosphere	995.0	14400	< th	dose dependent	sin	7	NA
808	349.24	atmosphere	995.0	4320	< th	dose dependent	sin	9	NA
813	349.25	atmosphere	995.0	4320	< th	dose dependent	rect.	18	9
846	349.28	atmosphere	1000.0	1440	> th	dose independent	sin	15	NA
900	349.39	atmosphere	995.0	4320	> th	dose independent	sin	8	NA
907	349.40	radiation	30.0	4320	< th	dose independent	rect.	21	10
920	349.41	wind	3.0	10	> th	dose independent	rect.	1	7
923	349.41	humidity	90.0	10	> th	dose dependent	rect.	17	1
941	349.44	wind	9.0	30	< th	dose dependent	rect.	18	10
958	349.47	atmosphere	995.0	4320	< th	dose independent	sin	8	NA
959	349.47	atmosphere	995.0	14400	< th	dose independent	rect.	1	1
964	349.47	atmosphere	995.0	14400	< th	dose independent	rect.	21	1
968	349.47	atmosphere	995.0	14400	> th	dose independent	rect.	21	2