Os01g0508500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0508500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 686.25 | 1.23 | 6.77 | -4 | 2.84 | -3.14 | -1.34 | 1.6 | -0.538 | 11.2 | 21.4 | 5417 | -- | -- |
| 689.71 | 1.22 | 6.7 | -3.55 | 2.87 | -3.26 | -1.3 | -- | -0.413 | 11.2 | 21.38 | 5429 | -- | -- |
| 690.37 | 1.22 | 6.78 | -4.05 | 2.82 | -2.91 | -- | 2.04 | -0.573 | 11.2 | 21.7 | 5613 | -- | -- |
| 696.54 | 1.23 | 6.71 | -3.67 | 2.85 | -3.33 | -- | -- | -0.465 | 11.1 | 21.3 | 5430 | -- | -- |
| 1083.23 | 1.54 | 6.7 | -2.76 | -- | -2.18 | -- | 1.93 | -0.058 | -- | 21.7 | 5613 | -- | -- |
| 930.85 | 1.43 | 6.45 | -1.53 | 2.73 | -- | -1.31 | -- | 0.666 | 11.1 | -- | -- | -- | -- |
| 938.06 | 1.43 | 6.45 | -1.59 | 2.74 | -- | -- | -- | 0.66 | 11.1 | -- | -- | -- | -- |
| 1106.44 | 1.56 | 6.65 | -2.27 | -- | -2.21 | -- | -- | 0.0574 | -- | 21.7 | 5613 | -- | -- |
| 870.43 | 1.37 | 6.58 | -- | 2.96 | -1.72 | -- | -- | 0.117 | 11 | 22.9 | 2300 | -- | -- |
| 1404.84 | 1.75 | 6.52 | -1.65 | -- | -- | -- | -- | 0.639 | -- | -- | -- | -- | -- |
| 1004.46 | 1.48 | 6.41 | -- | 2.75 | -- | -- | -- | 0.837 | 11.1 | -- | -- | -- | -- |
| 1237.44 | 1.64 | 6.58 | -- | -- | -1.95 | -- | -- | 0.37 | -- | 21.7 | 5613 | -- | -- |
| 1476.65 | 1.79 | 6.48 | -- | -- | -- | -- | -- | 0.822 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 649.62 | radiation | 1 | 43200 | < th | dose dependent | rect. | 3 | 2 |
| 5 | 651.80 | radiation | 30 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 6 | 652.45 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 12 | 652.89 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 10 |
| 17 | 653.27 | humidity | 80 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 18 | 653.50 | radiation | 30 | 43200 | < th | dose independent | rect. | 10 | 4 |
| 31 | 654.91 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 7 | 5 |
| 32 | 654.92 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 8 | 3 |
| 35 | 655.04 | radiation | 30 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 36 | 655.05 | humidity | 80 | 43200 | < th | dose independent | rect. | 16 | 2 |
| 38 | 655.17 | radiation | 1 | 43200 | < th | dose dependent | rect. | 19 | 10 |
| 46 | 655.64 | radiation | 1 | 43200 | > th | dose dependent | rect. | 18 | 11 |
| 55 | 656.24 | radiation | 1 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 65 | 656.29 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 66 | 656.33 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 24 | 3 |
| 77 | 656.95 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 79 | 656.97 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 85 | 657.06 | temperature | 15 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 101 | 657.50 | radiation | 30 | 43200 | < th | dose independent | rect. | 21 | 17 |
| 123 | 657.75 | radiation | 10 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 124 | 657.78 | radiation | 10 | 43200 | < th | dose independent | rect. | 12 | 3 |
| 137 | 658.10 | atmosphere | 1015 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 168 | 658.59 | temperature | 15 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 186 | 658.89 | temperature | 20 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 311 | 660.99 | radiation | 30 | 43200 | < th | dose independent | sin | 5 | NA |
| 409 | 661.92 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 18 | 12 |
| 442 | 662.14 | atmosphere | 1010 | 43200 | > th | dose independent | sin | 11 | NA |
| 462 | 662.32 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 489 | 662.46 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 6 | 16 |
| 561 | 662.88 | atmosphere | 1010 | 14400 | > th | dose independent | sin | 1 | NA |
| 563 | 662.88 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 6 | 16 |
| 566 | 662.91 | atmosphere | 1010 | 43200 | < th | dose independent | sin | 12 | NA |
| 567 | 662.91 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 620 | 663.13 | radiation | 10 | 43200 | < th | dose independent | rect. | 10 | 8 |
| 649 | 663.28 | atmosphere | 1010 | 14400 | < th | dose independent | sin | 1 | NA |
| 662 | 663.31 | radiation | 30 | 43200 | < th | dose independent | rect. | 8 | 15 |
| 824 | 663.86 | atmosphere | 995 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 846 | 663.98 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 10 | 20 |
| 858 | 664.02 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 10 | 20 |
| 859 | 664.03 | humidity | 90 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 962 | 664.33 | radiation | 20 | 43200 | > th | dose dependent | rect. | 9 | 5 |
| 997 | 664.44 | radiation | 10 | 43200 | < th | dose independent | sin | 23 | NA |