Os01g0508300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0508300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 67.61 | 0.386 | 7.46 | -2.25 | 0.589 | -1.26 | -0.799 | 0.3 | -0.189 | 11.5 | 21.5 | 5285 | -- | -- |
| 67.73 | 0.383 | 7.45 | -2.18 | 0.587 | -1.29 | -0.806 | -- | -0.171 | 11.5 | 21.5 | 5283 | -- | -- |
| 70.24 | 0.39 | 7.46 | -2.26 | 0.595 | -1.26 | -- | 0.237 | -0.189 | 11.2 | 21.49 | 5218 | -- | -- |
| 70.31 | 0.391 | 7.45 | -2.21 | 0.596 | -1.29 | -- | -- | -0.176 | 11.2 | 21.48 | 5257 | -- | -- |
| 90.36 | 0.443 | 7.48 | -2.34 | -- | -1.21 | -- | 0.405 | -0.203 | -- | 21.42 | 5973 | -- | -- |
| 105.08 | 0.481 | 7.35 | -1.37 | 0.537 | -- | -0.791 | -- | 0.269 | 11.4 | -- | -- | -- | -- |
| 107.66 | 0.486 | 7.35 | -1.4 | 0.544 | -- | -- | -- | 0.265 | 11 | -- | -- | -- | -- |
| 90.35 | 0.443 | 7.47 | -2.32 | -- | -1.32 | -- | -- | -0.18 | -- | 21.03 | 5985 | -- | -- |
| 146.45 | 0.564 | 7.35 | -- | 0.613 | -0.533 | -- | -- | 0.221 | 11.2 | 22.8 | 2190 | -- | -- |
| 126.07 | 0.525 | 7.37 | -1.41 | -- | -- | -- | -- | 0.261 | -- | -- | -- | -- | -- |
| 159.26 | 0.59 | 7.32 | -- | 0.557 | -- | -- | -- | 0.421 | 11.2 | -- | -- | -- | -- |
| 163.76 | 0.598 | 7.35 | -- | -- | -0.52 | -- | -- | 0.319 | -- | 21.03 | 5985 | -- | -- |
| 178.64 | 0.624 | 7.33 | -- | -- | -- | -- | -- | 0.418 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 68.60 | temperature | 25 | 4320 | < th | dose dependent | rect. | 23 | 1 |
| 2 | 68.67 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 3 |
| 53 | 69.12 | temperature | 25 | 4320 | < th | dose dependent | sin | 13 | NA |
| 57 | 69.15 | temperature | 10 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 70 | 69.24 | temperature | 20 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 74 | 69.27 | temperature | 25 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 136 | 69.54 | temperature | 10 | 4320 | > th | dose dependent | rect. | 1 | 1 |
| 191 | 69.68 | wind | 9 | 14400 | > th | dose independent | rect. | 5 | 7 |
| 297 | 69.96 | humidity | 80 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 311 | 69.98 | temperature | 20 | 270 | > th | dose dependent | rect. | 18 | 17 |
| 337 | 70.07 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 386 | 70.16 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 19 |
| 523 | 70.47 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 530 | 70.48 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 6 |
| 561 | 70.53 | temperature | 25 | 4320 | < th | dose dependent | no | NA | NA |
| 562 | 70.53 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 589 | 70.60 | temperature | 10 | 4320 | > th | dose dependent | sin | 11 | NA |
| 626 | 70.67 | temperature | 25 | 4320 | < th | dose dependent | rect. | 23 | 23 |
| 640 | 70.70 | temperature | 25 | 4320 | < th | dose dependent | rect. | 1 | 23 |
| 642 | 70.71 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 2 |
| 643 | 70.71 | humidity | 70 | 43200 | > th | dose independent | rect. | 4 | 5 |
| 659 | 70.73 | temperature | 20 | 270 | > th | dose dependent | sin | 8 | NA |
| 663 | 70.74 | humidity | 70 | 43200 | > th | dose independent | rect. | 2 | 7 |
| 693 | 70.80 | radiation | 30 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 718 | 70.86 | wind | 9 | 14400 | > th | dose independent | rect. | 23 | 14 |
| 729 | 70.89 | radiation | 30 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 764 | 70.97 | humidity | 70 | 43200 | > th | dose independent | rect. | 7 | 2 |
| 785 | 71.02 | humidity | 80 | 43200 | < th | dose independent | rect. | 16 | 2 |
| 790 | 71.03 | radiation | 1 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 822 | 71.08 | temperature | 20 | 4320 | < th | dose independent | rect. | 15 | 16 |
| 857 | 71.14 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 2 |
| 869 | 71.16 | wind | 9 | 14400 | > th | dose independent | rect. | 9 | 3 |
| 888 | 71.18 | radiation | 30 | 43200 | < th | dose independent | rect. | 11 | 3 |
| 895 | 71.19 | temperature | 20 | 4320 | < th | dose independent | sin | 13 | NA |
| 927 | 71.25 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 6 |
| 991 | 71.35 | temperature | 20 | 4320 | > th | dose independent | rect. | 14 | 17 |
| 995 | 71.36 | humidity | 80 | 43200 | < th | dose dependent | rect. | 7 | 2 |