Os01g0507000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os01g0507000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 94.51 | 0.457 | 10.8 | -0.294 | 1.02 | 1.6 | 0.557 | 0.13 | -0.153 | 4.88 | 25.21 | 257 | -- | -- |
| 94.48 | 0.453 | 10.8 | -0.273 | 1.01 | 1.59 | 0.599 | -- | -0.149 | 4.9 | 25.3 | 246 | -- | -- |
| 95.14 | 0.454 | 10.8 | -0.339 | 1 | 1.62 | -- | 0.398 | -0.159 | 4.88 | 25.38 | 249 | -- | -- |
| 94.55 | 0.453 | 10.8 | -0.278 | 0.805 | 1.63 | -- | -- | -0.134 | 5.06 | 28.06 | 214 | -- | -- |
| 116.71 | 0.503 | 10.8 | -0.205 | -- | 2.27 | -- | 0.323 | -0.0175 | -- | 30.01 | 246 | -- | -- |
| 131.38 | 0.537 | 10.9 | -0.682 | 1.26 | -- | 0.544 | -- | -0.475 | 4.69 | -- | -- | -- | -- |
| 132.16 | 0.538 | 10.9 | -0.685 | 1.26 | -- | -- | -- | -0.478 | 4.68 | -- | -- | -- | -- |
| 116.5 | 0.503 | 10.8 | -0.0831 | -- | 2.35 | -- | -- | -0.011 | -- | 30.24 | 236 | -- | -- |
| 96 | 0.456 | 10.8 | -- | 0.769 | 1.76 | -- | -- | -0.076 | 5.32 | 28.18 | 192 | -- | -- |
| 216.71 | 0.688 | 10.9 | -0.637 | -- | -- | -- | -- | -0.445 | -- | -- | -- | -- | -- |
| 144.51 | 0.562 | 10.9 | -- | 1.25 | -- | -- | -- | -0.402 | 4.69 | -- | -- | -- | -- |
| 116.67 | 0.503 | 10.8 | -- | -- | 2.37 | -- | -- | 0.00357 | -- | 30.21 | 236 | -- | -- |
| 227.4 | 0.704 | 10.9 | -- | -- | -- | -- | -- | -0.374 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 90.23 | temperature | 25 | 270 | < th | dose dependent | rect. | 3 | 21 |
| 7 | 91.08 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 20 |
| 71 | 94.66 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 106 | 95.39 | temperature | 25 | 270 | < th | dose dependent | rect. | 19 | 23 |
| 128 | 95.75 | temperature | 25 | 270 | < th | dose dependent | sin | 22 | NA |
| 187 | 96.93 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 5 |
| 211 | 97.11 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 16 |
| 241 | 97.31 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 23 |
| 243 | 97.33 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 16 |
| 249 | 97.35 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 7 |
| 261 | 97.39 | temperature | 20 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 277 | 97.48 | temperature | 20 | 1440 | < th | dose independent | rect. | 19 | 9 |
| 359 | 97.89 | temperature | 20 | 1440 | > th | dose independent | sin | 11 | NA |
| 360 | 97.89 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 366 | 97.91 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 402 | 98.09 | temperature | 20 | 1440 | < th | dose independent | sin | 11 | NA |
| 419 | 98.14 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 491 | 98.45 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 509 | 98.53 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 522 | 98.59 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 15 |
| 596 | 98.84 | temperature | 20 | 270 | < th | dose independent | rect. | 4 | 20 |
| 597 | 98.84 | temperature | 25 | 1440 | < th | dose dependent | rect. | 7 | 4 |
| 604 | 98.87 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 613 | 98.89 | temperature | 20 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 645 | 98.99 | temperature | 15 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 647 | 99.00 | temperature | 20 | 1440 | > th | dose independent | rect. | 8 | 23 |
| 666 | 99.08 | temperature | 20 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 677 | 99.10 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 688 | 99.15 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 691 | 99.16 | temperature | 20 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 702 | 99.18 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 721 | 99.25 | temperature | 20 | 1440 | < th | dose independent | rect. | 8 | 23 |
| 775 | 99.41 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 23 |