Os01g0505500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os01g0505500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 143.55 | 0.563 | 5.67 | 0.711 | 1.7 | -1.19 | 0.715 | 0.596 | 0.279 | 19.2 | 29.7 | 290 | -- | -- |
| 143.07 | 0.557 | 5.67 | 0.773 | 1.67 | -1.1 | 0.771 | -- | 0.237 | 19.3 | 29.49 | 288 | -- | -- |
| 144.78 | 0.56 | 5.66 | 0.747 | 1.7 | -1.16 | -- | 0.0315 | 0.29 | 19.1 | 29.62 | 289 | -- | -- |
| 144.56 | 0.56 | 5.66 | 0.753 | 1.67 | -1.15 | -- | -- | 0.265 | 19.1 | 29.6 | 301 | -- | -- |
| 237.87 | 0.718 | 5.61 | 0.503 | -- | -2 | -- | 1.84 | 0.0545 | -- | 28.5 | 479 | -- | -- |
| 173.15 | 0.617 | 5.67 | 0.953 | 2.11 | -- | 1.24 | -- | 0.279 | 18.7 | -- | -- | -- | -- |
| 177.01 | 0.623 | 5.67 | 0.934 | 2.12 | -- | -- | -- | 0.283 | 18.7 | -- | -- | -- | -- |
| 227.57 | 0.703 | 5.67 | 0.532 | -- | -2.1 | -- | -- | 0.0128 | -- | 28.47 | 486 | -- | -- |
| 159.28 | 0.588 | 5.68 | -- | 1.6 | -1.26 | -- | -- | 0.225 | 19.2 | 29.6 | 302 | -- | -- |
| 410.64 | 0.947 | 5.62 | 0.885 | -- | -- | -- | -- | 0.241 | -- | -- | -- | -- | -- |
| 199.99 | 0.662 | 5.69 | -- | 2.1 | -- | -- | -- | 0.179 | 18.7 | -- | -- | -- | -- |
| 234.88 | 0.714 | 5.69 | -- | -- | -2.16 | -- | -- | -0.0514 | -- | 28.42 | 486 | -- | -- |
| 431.29 | 0.969 | 5.65 | -- | -- | -- | -- | -- | 0.143 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 136.81 | temperature | 10 | 270 | > th | dose dependent | rect. | 2 | 14 |
| 8 | 138.07 | temperature | 30 | 270 | < th | dose independent | rect. | 6 | 13 |
| 9 | 138.11 | temperature | 30 | 270 | < th | dose independent | rect. | 5 | 22 |
| 14 | 139.05 | temperature | 30 | 720 | < th | dose independent | rect. | 22 | 14 |
| 23 | 139.50 | atmosphere | 1010 | 10 | < th | dose dependent | rect. | 12 | 8 |
| 26 | 139.59 | temperature | 30 | 270 | < th | dose independent | rect. | 15 | 22 |
| 35 | 139.96 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 10 | 9 |
| 39 | 140.05 | atmosphere | 1010 | 90 | < th | dose dependent | rect. | 13 | 8 |
| 54 | 140.81 | temperature | 30 | 720 | < th | dose independent | rect. | 6 | 6 |
| 64 | 141.17 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 17 |
| 105 | 141.98 | temperature | 10 | 270 | > th | dose dependent | sin | 0 | NA |
| 106 | 142.10 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 13 |
| 107 | 142.15 | temperature | 30 | 270 | < th | dose independent | sin | 0 | NA |
| 129 | 142.61 | temperature | 25 | 10 | > th | dose dependent | rect. | 10 | 23 |
| 135 | 142.69 | atmosphere | 995 | 30 | > th | dose dependent | rect. | 9 | 14 |
| 179 | 143.54 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 3 |
| 182 | 143.62 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 10 |
| 205 | 143.90 | temperature | 30 | 720 | > th | dose independent | rect. | 8 | 6 |
| 220 | 143.91 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 9 |
| 231 | 144.08 | temperature | 25 | 10 | > th | dose dependent | rect. | 13 | 20 |
| 233 | 144.10 | wind | 7 | 270 | < th | dose independent | rect. | 2 | 14 |
| 240 | 144.16 | temperature | 30 | 270 | > th | dose independent | sin | 1 | NA |
| 265 | 144.24 | temperature | 30 | 720 | > th | dose independent | sin | 8 | NA |
| 276 | 144.34 | temperature | 30 | 270 | > th | dose independent | rect. | 17 | 23 |
| 304 | 144.52 | temperature | 30 | 270 | > th | dose independent | rect. | 9 | 8 |
| 315 | 144.58 | temperature | 30 | 720 | > th | dose dependent | rect. | 8 | 5 |
| 338 | 144.64 | temperature | 15 | 270 | > th | dose dependent | rect. | 10 | 8 |
| 341 | 144.65 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 344 | 144.66 | temperature | 25 | 10 | > th | dose dependent | sin | 19 | NA |
| 375 | 144.79 | temperature | 15 | 270 | > th | dose dependent | rect. | 10 | 10 |
| 381 | 144.80 | temperature | 25 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 455 | 145.02 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 10 |
| 481 | 145.15 | temperature | 30 | 720 | > th | dose dependent | sin | 8 | NA |
| 495 | 145.19 | temperature | 30 | 720 | > th | dose independent | rect. | 10 | 1 |
| 542 | 145.27 | temperature | 25 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 604 | 145.55 | temperature | 30 | 270 | < th | dose independent | rect. | 24 | 23 |
| 627 | 145.59 | temperature | 30 | 270 | < th | dose independent | no | NA | NA |
| 635 | 145.61 | temperature | 25 | 90 | > th | dose dependent | rect. | 12 | 23 |
| 715 | 145.82 | temperature | 25 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 716 | 145.83 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 1 |
| 724 | 145.85 | temperature | 30 | 270 | > th | dose independent | no | NA | NA |
| 854 | 145.90 | temperature | 25 | 270 | > th | dose dependent | no | NA | NA |
| 861 | 145.92 | temperature | 25 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 887 | 145.96 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 17 |
| 904 | 146.00 | temperature | 25 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 925 | 146.07 | temperature | 30 | 270 | < th | dose independent | rect. | 22 | 23 |
| 994 | 146.26 | temperature | 30 | 270 | < th | dose independent | rect. | 20 | 23 |