Os01g0500500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os01g0500500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 15.95 | 0.188 | 10.8 | 0.76 | 0.19 | 0.41 | -0.0534 | 0.964 | 0.186 | 7.76 | 20.9 | 1407 | -- | -- |
| 17.62 | 0.195 | 10.8 | 0.545 | 0.199 | 0.293 | -0.0503 | -- | 0.122 | 7.81 | 21.7 | 2298 | -- | -- |
| 15.96 | 0.186 | 10.8 | 0.759 | 0.19 | 0.41 | -- | 0.964 | 0.186 | 7.79 | 20.9 | 1406 | -- | -- |
| 17.62 | 0.195 | 10.8 | 0.539 | 0.204 | 0.292 | -- | -- | 0.125 | 7.85 | 21.7 | 2188 | -- | -- |
| 17.9 | 0.197 | 10.8 | 0.764 | -- | 0.401 | -- | 0.95 | 0.188 | -- | 21 | 1412 | -- | -- |
| 20.21 | 0.211 | 10.8 | 0.682 | 0.19 | -- | -0.0829 | -- | 0.219 | 7.56 | -- | -- | -- | -- |
| 20.23 | 0.211 | 10.8 | 0.68 | 0.19 | -- | -- | -- | 0.219 | 7.6 | -- | -- | -- | -- |
| 19.66 | 0.207 | 10.8 | 0.574 | -- | 0.28 | -- | -- | 0.138 | -- | 21.7 | 1380 | -- | -- |
| 19.84 | 0.207 | 10.9 | -- | 0.192 | 0.528 | -- | -- | -0.0294 | 7.83 | 21 | 47520 | -- | -- |
| 22.16 | 0.22 | 10.8 | 0.683 | -- | -- | -- | -- | 0.222 | -- | -- | -- | -- | -- |
| 32.43 | 0.266 | 10.8 | -- | 0.196 | -- | -- | -- | 0.143 | 7.36 | -- | -- | -- | -- |
| 21.85 | 0.218 | 10.9 | -- | -- | 0.529 | -- | -- | -0.027 | -- | 21.01 | 47520 | -- | -- |
| 34.48 | 0.274 | 10.8 | -- | -- | -- | -- | -- | 0.146 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 16.29 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 12 |
| 8 | 16.32 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 22 |
| 9 | 16.32 | temperature | 20 | 1440 | > th | dose independent | rect. | 8 | 22 |
| 10 | 16.33 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 12 |
| 92 | 16.38 | temperature | 20 | 1440 | < th | dose independent | rect. | 2 | 21 |
| 97 | 16.39 | temperature | 20 | 1440 | > th | dose independent | sin | 11 | NA |
| 98 | 16.39 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 168 | 16.41 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 2 |
| 169 | 16.41 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 2 |
| 212 | 16.44 | temperature | 20 | 1440 | < th | dose independent | sin | 11 | NA |
| 255 | 16.45 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 293 | 16.45 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 9 |
| 311 | 16.46 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 7 |
| 352 | 16.48 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 3 |
| 385 | 16.50 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 3 |
| 426 | 16.52 | temperature | 25 | 1440 | < th | dose dependent | sin | 13 | NA |
| 433 | 16.52 | temperature | 25 | 1440 | < th | dose dependent | rect. | 10 | 19 |
| 499 | 16.56 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 1 |
| 569 | 16.59 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 571 | 16.59 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 4 |
| 596 | 16.60 | temperature | 20 | 4320 | < th | dose independent | rect. | 16 | 8 |
| 627 | 16.61 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 8 |
| 667 | 16.62 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 19 |
| 670 | 16.63 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 672 | 16.63 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 6 |
| 694 | 16.63 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 17 |
| 819 | 16.67 | temperature | 20 | 1440 | > th | dose independent | sin | 0 | NA |
| 835 | 16.67 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 877 | 16.68 | temperature | 25 | 1440 | < th | dose dependent | rect. | 23 | 23 |