Os01g0500400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0500400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 183.52 | 0.636 | 4.95 | -2.22 | 2.21 | -1.37 | -1.71 | -0.727 | -0.493 | 20.9 | 24.2 | 4962 | -- | -- |
| 182.62 | 0.629 | 4.99 | -2.44 | 2.24 | -1.32 | -1.66 | -- | -0.62 | 20.8 | 23.5 | 4856 | -- | -- |
| 190.36 | 0.643 | 4.95 | -2.08 | 2.26 | -1.29 | -- | -0.994 | -0.549 | 21 | 23.5 | 4665 | -- | -- |
| 191.89 | 0.645 | 4.99 | -2.38 | 2.25 | -1.31 | -- | -- | -0.619 | 20.9 | 23.5 | 4798 | -- | -- |
| 414.46 | 0.948 | 4.93 | -2.3 | -- | -1.89 | -- | -0.642 | -0.68 | -- | 26.2 | 2108 | -- | -- |
| 244.03 | 0.732 | 4.89 | -1.79 | 2.27 | -- | -1.57 | -- | -0.18 | 21 | -- | -- | -- | -- |
| 252.42 | 0.744 | 4.89 | -1.74 | 2.27 | -- | -- | -- | -0.18 | 21 | -- | -- | -- | -- |
| 336.81 | 0.855 | 5.02 | -2.26 | -- | -2.1 | -- | -- | -0.821 | -- | 25.7 | 724 | -- | -- |
| 313.68 | 0.825 | 4.87 | -- | 2.24 | -0.668 | -- | -- | -0.0927 | 20.8 | 26.8 | 2662 | -- | -- |
| 549.73 | 1.1 | 4.83 | -1.73 | -- | -- | -- | -- | -0.194 | -- | -- | -- | -- | -- |
| 331.87 | 0.852 | 4.85 | -- | 2.28 | -- | -- | -- | 0.0133 | 21 | -- | -- | -- | -- |
| 476.57 | 1.02 | 4.92 | -- | -- | -1.77 | -- | -- | -0.599 | -- | 25.47 | 713 | -- | -- |
| 628.91 | 1.17 | 4.79 | -- | -- | -- | -- | -- | -0.00156 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 179.99 | wind | 1 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 2 | 180.68 | radiation | 1 | 4320 | > th | dose dependent | rect. | 16 | 13 |
| 3 | 180.82 | radiation | 1 | 4320 | > th | dose dependent | rect. | 16 | 3 |
| 13 | 180.83 | radiation | 10 | 4320 | < th | dose independent | rect. | 16 | 1 |
| 14 | 180.95 | radiation | 40 | 4320 | < th | dose dependent | rect. | 16 | 13 |
| 15 | 180.96 | radiation | 40 | 4320 | < th | dose dependent | rect. | 16 | 3 |
| 17 | 180.97 | radiation | 40 | 4320 | < th | dose dependent | rect. | 16 | 8 |
| 26 | 181.07 | radiation | 40 | 4320 | < th | dose dependent | rect. | 16 | 10 |
| 37 | 181.22 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 11 |
| 38 | 181.25 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 6 |
| 45 | 181.34 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 2 |
| 51 | 181.38 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 4 |
| 52 | 181.41 | radiation | 1 | 4320 | > th | dose dependent | rect. | 16 | 1 |
| 56 | 181.65 | temperature | 20 | 4320 | > th | dose dependent | rect. | 21 | 2 |
| 61 | 181.82 | radiation | 40 | 4320 | < th | dose dependent | rect. | 16 | 1 |
| 83 | 182.47 | temperature | 20 | 720 | > th | dose dependent | rect. | 13 | 20 |
| 85 | 182.51 | radiation | 10 | 4320 | < th | dose independent | rect. | 15 | 4 |
| 86 | 182.51 | radiation | 10 | 4320 | < th | dose independent | rect. | 15 | 9 |
| 102 | 182.62 | temperature | 20 | 4320 | > th | dose dependent | rect. | 21 | 10 |
| 140 | 183.02 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 12 |
| 141 | 183.02 | temperature | 20 | 4320 | > th | dose dependent | rect. | 17 | 14 |
| 151 | 183.10 | temperature | 20 | 4320 | > th | dose dependent | sin | 12 | NA |
| 251 | 183.59 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 272 | 183.70 | wind | 7 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 276 | 183.71 | temperature | 20 | 4320 | > th | dose dependent | rect. | 3 | 4 |
| 281 | 183.76 | temperature | 20 | 4320 | > th | dose dependent | rect. | 5 | 1 |
| 292 | 183.81 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 369 | 184.12 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 2 |
| 392 | 184.19 | temperature | 30 | 4320 | < th | dose dependent | rect. | 15 | 15 |
| 393 | 184.20 | temperature | 30 | 4320 | < th | dose dependent | rect. | 16 | 12 |
| 418 | 184.24 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 426 | 184.26 | temperature | 30 | 4320 | < th | dose dependent | sin | 14 | NA |
| 762 | 184.86 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 775 | 184.88 | humidity | 90 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 782 | 184.89 | humidity | 90 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 814 | 184.96 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 827 | 184.98 | humidity | 90 | 43200 | > th | dose dependent | rect. | 4 | 2 |
| 954 | 185.14 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 969 | 185.17 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 1 |