Os01g0498300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF563 family protein.
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Os01g0498300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF563 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 352.39 | 0.882 | 6.07 | 2.45 | 0.322 | -1.74 | -1.73 | 4.62 | -0.314 | 12.8 | 25.3 | 3714 | -- | -- |
| 350.76 | 0.872 | 6.13 | 2.25 | 0.512 | -1.9 | -2.05 | -- | -0.215 | 12.9 | 21.8 | 16774 | -- | -- |
| 364.73 | 0.889 | 6.06 | 2.48 | 0.342 | -1.76 | -- | 5.05 | -0.292 | 13.4 | 25.31 | 3712 | -- | -- |
| 366.6 | 0.892 | 6.11 | 2.4 | 0.493 | -2.04 | -- | -- | -0.157 | 13.1 | 21.3 | 16740 | -- | -- |
| 370.97 | 0.897 | 6.05 | 2.61 | -- | -1.87 | -- | 5.48 | -0.28 | -- | 25.5 | 3803 | -- | -- |
| 423.19 | 0.964 | 6.3 | 0.653 | 0.528 | -- | -1.95 | -- | -1 | 12.4 | -- | -- | -- | -- |
| 439.63 | 0.982 | 6.31 | 0.578 | 0.535 | -- | -- | -- | -1.01 | 12.5 | -- | -- | -- | -- |
| 380.86 | 0.909 | 6.12 | 2.46 | -- | -2.11 | -- | -- | -0.148 | -- | 21.4 | 16798 | -- | -- |
| 413.32 | 0.947 | 6.26 | -- | 0.486 | -0.978 | -- | -- | -0.796 | 13.4 | 27.1 | 10492 | -- | -- |
| 457.58 | 1 | 6.32 | 0.56 | -- | -- | -- | -- | -1.02 | -- | -- | -- | -- | -- |
| 448.44 | 0.991 | 6.32 | -- | 0.526 | -- | -- | -- | -1.08 | 12.4 | -- | -- | -- | -- |
| 424.56 | 0.96 | 6.25 | -- | -- | -0.962 | -- | -- | -0.731 | -- | 27.3 | 10266 | -- | -- |
| 465.85 | 1.01 | 6.33 | -- | -- | -- | -- | -- | -1.08 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 339.56 | humidity | 80 | 43200 | < th | dose independent | rect. | 14 | 3 |
| 2 | 339.60 | humidity | 80 | 43200 | > th | dose independent | rect. | 13 | 5 |
| 14 | 340.50 | temperature | 20 | 270 | > th | dose dependent | rect. | 18 | 20 |
| 17 | 340.70 | humidity | 80 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 22 | 341.14 | humidity | 80 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 38 | 341.94 | humidity | 80 | 43200 | > th | dose dependent | rect. | 14 | 5 |
| 44 | 342.23 | humidity | 90 | 43200 | < th | dose independent | rect. | 17 | 3 |
| 49 | 342.38 | humidity | 70 | 43200 | > th | dose dependent | rect. | 13 | 2 |
| 69 | 342.96 | humidity | 90 | 43200 | > th | dose independent | rect. | 17 | 4 |
| 85 | 343.66 | humidity | 80 | 43200 | > th | dose dependent | rect. | 10 | 9 |
| 91 | 343.81 | temperature | 25 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 92 | 343.81 | temperature | 15 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 99 | 343.90 | temperature | 15 | 14400 | > th | dose dependent | rect. | 2 | 1 |
| 100 | 343.90 | temperature | 15 | 14400 | > th | dose dependent | rect. | 24 | 3 |
| 105 | 343.98 | temperature | 25 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 120 | 344.13 | temperature | 20 | 14400 | > th | dose independent | rect. | 23 | 2 |
| 123 | 344.17 | temperature | 20 | 14400 | < th | dose independent | rect. | 23 | 2 |
| 208 | 345.24 | humidity | 90 | 43200 | > th | dose independent | rect. | 12 | 13 |
| 221 | 345.32 | temperature | 30 | 14400 | < th | dose dependent | rect. | 24 | 1 |
| 228 | 345.35 | humidity | 90 | 43200 | < th | dose independent | rect. | 13 | 11 |
| 243 | 345.40 | temperature | 30 | 14400 | < th | dose dependent | rect. | 24 | 3 |
| 251 | 345.46 | humidity | 90 | 43200 | > th | dose independent | sin | 18 | NA |
| 297 | 345.71 | temperature | 20 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 303 | 345.73 | temperature | 20 | 14400 | < th | dose independent | rect. | 20 | 10 |
| 315 | 345.78 | temperature | 15 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 336 | 345.85 | humidity | 80 | 43200 | > th | dose dependent | rect. | 10 | 13 |
| 380 | 346.00 | humidity | 90 | 43200 | < th | dose independent | sin | 18 | NA |
| 418 | 346.15 | humidity | 80 | 43200 | > th | dose dependent | sin | 19 | NA |
| 438 | 346.20 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 477 | 346.30 | temperature | 20 | 14400 | > th | dose dependent | rect. | 23 | 16 |
| 482 | 346.33 | temperature | 20 | 14400 | > th | dose dependent | sin | 6 | NA |
| 509 | 346.38 | temperature | 20 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 560 | 346.48 | temperature | 25 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 573 | 346.50 | temperature | 20 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 578 | 346.51 | temperature | 20 | 14400 | < th | dose independent | sin | 11 | NA |
| 606 | 346.56 | temperature | 20 | 14400 | > th | dose dependent | rect. | 14 | 19 |
| 615 | 346.57 | temperature | 20 | 14400 | > th | dose dependent | rect. | 17 | 17 |
| 695 | 346.66 | temperature | 20 | 14400 | > th | dose dependent | sin | 12 | NA |
| 818 | 346.85 | temperature | 25 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 838 | 346.88 | temperature | 20 | 14400 | > th | dose dependent | no | NA | NA |
| 860 | 346.90 | temperature | 20 | 14400 | > th | dose dependent | rect. | 5 | 23 |
| 864 | 346.91 | temperature | 20 | 14400 | > th | dose dependent | rect. | 17 | 11 |
| 867 | 346.92 | humidity | 70 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 880 | 346.93 | temperature | 30 | 14400 | < th | dose dependent | rect. | 5 | 2 |
| 900 | 346.95 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 4 |
| 912 | 346.97 | temperature | 20 | 14400 | > th | dose dependent | rect. | 2 | 23 |
| 928 | 346.99 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 7 |
| 939 | 347.01 | temperature | 20 | 14400 | > th | dose independent | sin | 10 | NA |