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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0495200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.05 (0.0263) R2 : 0.000444
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0249 (0.0553) R2dN8 : 0.000573 R2N8 : 0.000444
σ : 0.494
deviance : 112.19
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
86.92 0.434 3.05 0.17 0.15 1.52 -0.457 11.4 0.0408 5.17 10 10 9 1
104.45 0.48 3.04 0.128 0.141 1.2 -0.421 -- 0.0476 4.63 10 10 9 1
87.38 0.439 3.04 0.17 0.152 1.5 -- 11.3 0.0431 5.98 10 10 9 1
104.61 0.476 3.04 0.128 0.152 1.17 -- -- 0.054 6.02 8 9 8.98 2.93
88.58 0.441 3.05 0.175 -- 1.54 -- 11.3 0.047 -- 10 10 9 1
110.07 0.492 3.04 0.122 0.171 -- -0.305 -- 0.0335 5.7 -- -- -- --
110.18 0.492 3.04 0.122 0.175 -- -- -- 0.0353 6.68 -- -- -- --
104.28 0.476 3.04 0.0985 -- 1.37 -- -- 0.0417 -- 7.689 21 8.02 1.63
105.02 0.477 3.04 -- 0.154 1.18 -- -- 0.0363 5.87 7.861 10 8.82 3.1
111.78 0.494 3.04 0.126 -- -- -- -- 0.0388 -- -- -- -- --
110.57 0.492 3.04 -- 0.177 -- -- -- 0.0218 6.64 -- -- -- --
104.53 0.476 3.05 -- -- 1.61 -- -- 0.0383 -- 7.689 21 8.02 1.63
112.19 0.494 3.05 -- -- -- -- -- 0.0249 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 86.92 radiation 10.0 10 < th dose independent rect. 9 1
5 87.13 radiation 10.0 10 < th dose dependent rect. 10 1
11 88.52 wind 1.0 30 < th dose independent rect. 9 1
12 88.91 wind 1.0 10 < th dose dependent rect. 9 1
45 96.43 temperature 25.0 90 > th dose dependent rect. 2 2
46 96.46 temperature 25.0 90 > th dose dependent rect. 1 4
47 96.51 temperature 25.0 270 > th dose independent rect. 1 1
48 96.51 temperature 25.0 90 > th dose independent rect. 1 3
62 97.44 atmosphere 1005.0 30 > th dose dependent rect. 2 3
76 98.94 atmosphere 1015.0 30 < th dose dependent rect. 2 1
77 98.95 wind 1.0 30 < th dose independent rect. 2 1
78 98.95 wind 3.0 30 < th dose dependent rect. 2 1
81 98.97 temperature 15.0 30 > th dose independent rect. 3 23
86 98.98 temperature 25.0 30 < th dose independent rect. 2 1
88 98.99 temperature 10.0 30 > th dose independent rect. 2 1
91 98.99 humidity 50.0 30 > th dose independent rect. 2 1
94 98.99 atmosphere 995.0 30 > th dose independent rect. 2 1
95 98.99 atmosphere 1010.0 30 < th dose independent rect. 2 1
97 98.99 radiation 1.0 30 < th dose independent rect. 2 1
102 98.99 precipitation 0.1 30 < th dose independent rect. 2 1
104 98.99 temperature 10.0 30 > th dose dependent rect. 2 1
105 98.99 humidity 50.0 30 > th dose dependent rect. 2 1
109 98.99 radiation 1.0 30 < th dose dependent rect. 2 1
114 98.99 precipitation 0.1 30 < th dose dependent rect. 2 1
120 99.01 atmosphere 1005.0 30 > th dose dependent rect. 2 1
122 99.02 temperature 30.0 30 < th dose dependent rect. 2 1
125 99.05 atmosphere 995.0 30 > th dose dependent rect. 2 1
129 99.09 atmosphere 1005.0 30 > th dose independent rect. 2 1
172 99.23 wind 1.0 30 > th dose independent rect. 2 1
177 99.28 wind 9.0 30 < th dose independent rect. 3 23
183 99.44 atmosphere 1005.0 270 > th dose dependent rect. 1 1
199 100.05 humidity 80.0 10 > th dose dependent rect. 10 1
203 100.30 atmosphere 995.0 30 > th dose independent rect. 3 23
211 100.61 precipitation 0.1 30 < th dose independent rect. 3 23
212 100.61 precipitation 0.1 30 < th dose dependent rect. 3 23
251 101.59 radiation 1.0 43200 < th dose dependent rect. 3 1
259 101.70 atmosphere 1005.0 30 > th dose independent rect. 2 3
263 101.76 humidity 90.0 270 < th dose independent rect. 1 1
271 101.87 radiation 1.0 4320 < th dose dependent rect. 3 1
279 101.91 wind 9.0 1440 < th dose independent rect. 3 1
280 101.91 temperature 10.0 1440 > th dose independent rect. 3 1
283 101.91 temperature 30.0 1440 < th dose independent rect. 3 1
287 101.91 humidity 50.0 1440 > th dose independent rect. 3 1
296 101.91 atmosphere 995.0 1440 > th dose independent rect. 3 1
297 101.91 radiation 1.0 1440 < th dose independent rect. 3 1
317 101.91 temperature 10.0 1440 > th dose independent rect. 4 23
353 102.49 humidity 50.0 30 > th dose independent rect. 3 23
389 103.01 wind 5.0 30 < th dose dependent rect. 2 3
400 103.15 humidity 80.0 10 > th dose independent rect. 9 1
478 103.55 atmosphere 1000.0 30 > th dose independent rect. 5 21
524 103.88 precipitation 0.1 30 < th dose independent rect. 2 3
526 103.88 precipitation 0.1 30 < th dose dependent rect. 2 3
528 103.90 wind 1.0 10 < th dose independent rect. 9 18
533 103.93 wind 9.0 30 < th dose independent rect. 5 21
540 103.96 temperature 10.0 30 > th dose independent rect. 2 3
542 103.96 temperature 30.0 30 < th dose independent rect. 2 3
543 103.96 humidity 50.0 30 > th dose independent rect. 2 3
547 103.96 atmosphere 1010.0 30 < th dose independent rect. 2 3
549 103.96 radiation 1.0 30 < th dose independent rect. 2 3
555 103.96 temperature 10.0 30 > th dose independent rect. 5 21
556 103.96 atmosphere 1015.0 30 < th dose independent rect. 3 23
559 103.96 radiation 10.0 30 < th dose dependent rect. 2 3
565 103.97 precipitation 0.1 30 < th dose independent rect. 5 21
566 103.97 precipitation 0.1 30 < th dose dependent rect. 5 21
604 104.09 temperature 25.0 1440 < th dose independent rect. 1 1
609 104.11 humidity 50.0 30 > th dose independent rect. 5 21
625 104.24 temperature 10.0 30 > th dose dependent rect. 5 21
631 104.27 wind 9.0 1440 < th dose independent rect. 3 3
632 104.27 temperature 10.0 1440 > th dose independent rect. 3 3
635 104.27 temperature 30.0 1440 < th dose independent rect. 3 3
639 104.27 humidity 50.0 1440 > th dose independent rect. 3 3
648 104.27 atmosphere 995.0 1440 > th dose independent rect. 3 3
649 104.27 radiation 20.0 1440 < th dose independent rect. 3 3
658 104.27 temperature 10.0 1440 > th dose independent rect. 6 21
672 104.31 wind 1.0 10 < th dose independent rect. 13 14
683 104.36 radiation 1.0 10 < th dose dependent rect. 2 12
695 104.44 radiation 1.0 10 < th dose independent rect. 2 12
707 104.49 radiation 1.0 10 < th dose dependent rect. 2 6
721 104.54 humidity 50.0 30 > th dose dependent rect. 2 3
726 104.57 radiation 1.0 10 < th dose independent rect. 2 6
797 104.81 wind 1.0 10 > th dose independent rect. 5 23
800 104.83 humidity 80.0 4320 < th dose dependent rect. 1 1
820 104.90 radiation 10.0 10 < th dose independent rect. 6 20
823 104.91 temperature 25.0 90 > th dose independent rect. 5 5
843 104.99 temperature 25.0 90 > th dose independent rect. 8 2
872 105.09 radiation 10.0 10 < th dose independent rect. 9 17
886 105.12 wind 1.0 10 < th dose independent rect. 17 10
893 105.14 wind 1.0 10 < th dose independent rect. 21 6
919 105.19 temperature 30.0 30 < th dose independent rect. 5 21
986 105.35 wind 1.0 30 > th dose independent rect. 5 21
987 105.35 atmosphere 1015.0 30 < th dose independent rect. 5 21
990 105.36 atmosphere 1005.0 10 > th dose dependent rect. 4 1