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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0494300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, putative npRNA.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.63 (0.186) R2 : 0.32
β1 : 8.55 (1.41) R2dD : 0.908 R2D : -1.77
β2 : 1.08 (0.237) R2dC : 0.0315 R2C : -0.264
β3 : -5.38 (0.754) R2dE : 0.91 R2E : -1.45
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 54.4 (6.13) R2dD*E : 2.81 R2D*E : -1.07
γ1 : -0.279 (0.228) R2dN8 : 0.00368 R2N8 : -0.289
σ : 1.8
deviance : 1498.95
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_____
C
peak time of C : 21.8
E
wheather : temperature
threshold : 29.96
memory length : 1382
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 9.83
open length of G : 1.84

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1499.02 1.82 3.63 8.52 1.08 -5.36 0.0472 54.2 -0.29 21.8 29.97 1385 9.82 1.86
1741.87 1.94 5.23 -5.39 0.67 2.24 -0.496 -- -2.29 1.4 25.6 47520 11.5 12.4
1498.95 1.8 3.63 8.55 1.08 -5.38 -- 54.4 -0.279 21.8 29.96 1382 9.83 1.84
1711.23 1.93 5.31 -5.5 0.883 2.19 -- -- -2.37 22.8 26.6 47520 11.2 9.93
1566.17 1.84 3.61 8.45 -- -5.28 -- 54.4 -0.278 -- 29.95 1363 9.82 1.88
1815.32 2 5.07 -3.19 0.965 -- 0.507 -- -1.24 22.8 -- -- -- --
1816.38 2 5.07 -3.21 0.964 -- -- -- -1.24 22.8 -- -- -- --
1755.72 1.95 5.35 -5.73 -- 2.5 -- -- -2.55 -- 26.5 47520 14.4 6.04
1924.97 2.04 4.89 -- 0.974 -2.08 -- -- -0.438 22.7 18.63 47520 11.6 12.1
1873.82 2.02 5.05 -3.19 -- -- -- -- -1.24 -- -- -- -- --
2088.36 2.14 4.99 -- 0.942 -- -- -- -0.885 22.5 -- -- -- --
1981.01 2.07 4.88 -- -- -2.1 -- -- -0.46 -- 16.5 47520 18.3 7.48
2142.78 2.16 4.97 -- -- -- -- -- -0.883 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1505.16 humidity 80 14400 > th dose independent rect. 19 14
3 1511.46 humidity 80 14400 < th dose independent rect. 18 15
6 1515.59 temperature 30 1440 > th dose independent rect. 10 2
9 1517.49 humidity 80 14400 < th dose independent rect. 18 13
10 1518.61 humidity 80 14400 > th dose independent sin 10 NA
16 1520.92 temperature 30 1440 < th dose independent rect. 10 2
22 1522.66 humidity 80 14400 < th dose independent sin 11 NA
29 1523.83 humidity 80 14400 < th dose dependent rect. 18 13
41 1526.78 temperature 25 4320 > th dose independent rect. 1 1
42 1526.78 temperature 25 4320 > th dose dependent rect. 23 1
44 1526.98 temperature 30 1440 < th dose independent rect. 18 18
48 1527.63 atmosphere 1000 270 < th dose independent rect. 15 16
50 1528.44 humidity 80 14400 < th dose dependent rect. 19 10
56 1529.35 temperature 30 1440 < th dose independent rect. 4 8
87 1534.82 temperature 30 1440 < th dose independent rect. 22 14
89 1535.08 temperature 30 1440 > th dose independent rect. 18 18
106 1537.55 atmosphere 1000 270 < th dose independent rect. 13 19
143 1541.35 atmosphere 1000 270 < th dose independent sin 13 NA
145 1541.81 atmosphere 1000 270 > th dose independent sin 14 NA
152 1542.45 atmosphere 1005 90 < th dose dependent rect. 18 15
187 1544.69 wind 9 14400 > th dose dependent rect. 13 2
188 1544.85 atmosphere 1000 10 < th dose independent rect. 13 20
199 1545.44 atmosphere 1005 270 < th dose dependent rect. 16 16
218 1547.32 atmosphere 1000 720 > th dose independent rect. 13 13
238 1548.90 humidity 80 14400 > th dose independent rect. 2 7
241 1549.04 atmosphere 1000 720 < th dose independent rect. 13 12
305 1553.50 atmosphere 1000 720 > th dose independent rect. 14 9
318 1554.05 temperature 30 1440 < th dose independent sin 9 NA
338 1556.25 temperature 30 1440 > th dose independent sin 9 NA
341 1556.57 temperature 30 1440 > th dose dependent rect. 11 1
343 1556.70 humidity 90 14400 < th dose dependent rect. 20 1
356 1557.60 humidity 80 14400 < th dose dependent sin 11 NA
377 1558.75 atmosphere 1000 720 > th dose independent sin 17 NA
380 1558.92 atmosphere 1000 270 > th dose independent rect. 18 23
398 1559.63 temperature 25 4320 > th dose independent rect. 24 8
430 1561.19 temperature 25 4320 > th dose dependent rect. 23 8
437 1561.64 humidity 80 14400 > th dose independent rect. 20 1
458 1562.16 atmosphere 1005 270 < th dose dependent rect. 11 21
459 1562.25 atmosphere 1000 10 < th dose independent rect. 18 15
496 1564.12 atmosphere 1005 270 < th dose dependent sin 13 NA
537 1565.92 humidity 80 14400 < th dose independent rect. 20 1
570 1567.39 temperature 30 4320 < th dose independent rect. 17 1
592 1568.42 radiation 40 14400 > th dose dependent rect. 12 1
600 1568.71 temperature 30 1440 > th dose dependent rect. 18 20
689 1570.55 wind 9 14400 > th dose independent rect. 13 1
708 1571.33 atmosphere 1005 270 < th dose dependent rect. 16 22
731 1572.06 atmosphere 1000 10 < th dose independent rect. 16 17
742 1572.27 atmosphere 1000 270 > th dose independent no NA NA
784 1573.05 atmosphere 1005 720 < th dose dependent sin 16 NA
814 1574.02 atmosphere 1000 720 < th dose independent rect. 19 4
885 1575.31 atmosphere 1000 270 < th dose independent no NA NA
914 1575.95 temperature 25 4320 < th dose independent rect. 24 8
944 1576.62 atmosphere 1000 270 > th dose independent rect. 16 23
949 1576.70 temperature 25 4320 < th dose independent rect. 3 1
971 1577.39 atmosphere 1000 10 < th dose independent rect. 18 22
982 1577.76 atmosphere 1000 270 < th dose independent rect. 1 23
985 1577.91 temperature 25 4320 < th dose independent rect. 1 1