Os01g0393100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to CUC2.
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Os01g0393100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to CUC2.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 135.1 | 0.546 | 2.78 | -0.0794 | 0.159 | -0.122 | 0.148 | -2.67 | 0.101 | 11.5 | 5.1 | 5485 | -- | -- |
| 140.95 | 0.553 | 2.88 | -0.0496 | 0.159 | 0.185 | 0.296 | -- | -0.00825 | 11.4 | 7.2 | 5423 | -- | -- |
| 135.18 | 0.542 | 2.78 | -0.0739 | 0.16 | -0.124 | -- | -2.71 | 0.102 | 11.1 | 5.064 | 5484 | -- | -- |
| 141.08 | 0.553 | 2.87 | -0.06 | 0.169 | 0.207 | -- | -- | 0.0367 | 10.8 | 6.7 | 2771 | -- | -- |
| 136.75 | 0.545 | 2.78 | -0.0876 | -- | -0.166 | -- | -2.73 | 0.107 | -- | 5.039 | 5484 | -- | -- |
| 141.74 | 0.558 | 2.87 | -0.123 | 0.147 | -- | 0.361 | -- | 0.018 | 12.2 | -- | -- | -- | -- |
| 142.18 | 0.558 | 2.87 | -0.111 | 0.153 | -- | -- | -- | 0.0187 | 11 | -- | -- | -- | -- |
| 142.54 | 0.556 | 2.87 | -0.0374 | -- | 0.263 | -- | -- | 0.0501 | -- | 7.023 | 2771 | -- | -- |
| 141 | 0.553 | 2.87 | -- | 0.165 | 0.3 | -- | -- | 0.0533 | 11.1 | 6.6 | 2766 | -- | -- |
| 143.64 | 0.56 | 2.88 | -0.114 | -- | -- | -- | -- | 0.0175 | -- | -- | -- | -- | -- |
| 142.5 | 0.558 | 2.87 | -- | 0.154 | -- | -- | -- | 0.031 | 11.1 | -- | -- | -- | -- |
| 142.57 | 0.556 | 2.87 | -- | -- | 0.275 | -- | -- | 0.0545 | -- | 7.1 | 2771 | -- | -- |
| 143.98 | 0.56 | 2.87 | -- | -- | -- | -- | -- | 0.0302 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 124.40 | wind | 1 | 90 | < th | dose dependent | rect. | 24 | 1 |
| 2 | 127.59 | wind | 1 | 90 | < th | dose independent | rect. | 24 | 1 |
| 3 | 128.42 | radiation | 1 | 90 | < th | dose independent | rect. | 10 | 1 |
| 5 | 128.42 | radiation | 1 | 90 | < th | dose dependent | rect. | 10 | 1 |
| 7 | 128.64 | radiation | 1 | 10 | < th | dose independent | rect. | 7 | 5 |
| 9 | 128.64 | radiation | 1 | 10 | < th | dose dependent | rect. | 7 | 5 |
| 17 | 129.64 | radiation | 1 | 90 | < th | dose dependent | rect. | 14 | 2 |
| 18 | 129.68 | radiation | 1 | 10 | < th | dose dependent | rect. | 11 | 5 |
| 23 | 129.92 | radiation | 10 | 10 | < th | dose dependent | rect. | 11 | 1 |
| 30 | 130.29 | radiation | 1 | 10 | < th | dose independent | rect. | 11 | 1 |
| 68 | 131.07 | radiation | 1 | 90 | < th | dose independent | rect. | 14 | 1 |
| 70 | 131.10 | radiation | 1 | 10 | < th | dose independent | rect. | 11 | 5 |
| 89 | 131.55 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 3 |
| 97 | 131.87 | atmosphere | 1005 | 30 | < th | dose dependent | rect. | 1 | 1 |
| 120 | 132.50 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 121 | 132.50 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 3 |
| 124 | 132.55 | radiation | 1 | 720 | < th | dose dependent | rect. | 14 | 2 |
| 129 | 132.67 | radiation | 1 | 720 | < th | dose independent | rect. | 14 | 1 |
| 137 | 133.05 | radiation | 1 | 90 | < th | dose independent | rect. | 10 | 6 |
| 151 | 133.47 | radiation | 1 | 10 | < th | dose dependent | rect. | 4 | 13 |
| 181 | 134.05 | humidity | 90 | 90 | > th | dose dependent | rect. | 24 | 1 |
| 202 | 134.45 | radiation | 1 | 1440 | > th | dose independent | rect. | 4 | 1 |
| 212 | 134.45 | radiation | 1 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 237 | 134.70 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 7 | 1 |
| 245 | 134.70 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 7 | 1 |
| 263 | 134.74 | radiation | 10 | 1440 | < th | dose dependent | rect. | 19 | 10 |
| 268 | 134.79 | radiation | 1 | 10 | < th | dose independent | rect. | 4 | 13 |
| 295 | 135.05 | radiation | 10 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 311 | 135.27 | radiation | 1 | 10 | < th | dose dependent | rect. | 1 | 16 |
| 312 | 135.28 | radiation | 10 | 1440 | < th | dose independent | rect. | 19 | 10 |
| 321 | 135.35 | radiation | 1 | 10 | < th | dose independent | rect. | 1 | 16 |
| 333 | 135.51 | humidity | 60 | 14400 | > th | dose independent | rect. | 6 | 2 |
| 335 | 135.52 | humidity | 80 | 270 | > th | dose independent | rect. | 11 | 2 |
| 347 | 135.60 | radiation | 10 | 1440 | < th | dose independent | rect. | 4 | 1 |
| 348 | 135.60 | humidity | 80 | 90 | > th | dose independent | rect. | 11 | 5 |
| 372 | 135.81 | humidity | 60 | 14400 | > th | dose independent | rect. | 20 | 12 |
| 374 | 135.82 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 3 | 2 |
| 386 | 135.91 | temperature | 20 | 10 | > th | dose independent | rect. | 1 | 4 |
| 388 | 135.91 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 5 | 1 |
| 430 | 136.06 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 4 | 1 |
| 437 | 136.08 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 4 | 1 |
| 442 | 136.09 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 3 | 4 |
| 447 | 136.11 | temperature | 20 | 90 | > th | dose independent | rect. | 1 | 1 |
| 449 | 136.11 | radiation | 30 | 14400 | < th | dose independent | rect. | 17 | 9 |
| 471 | 136.19 | wind | 1 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 500 | 136.25 | radiation | 1 | 10 | < th | dose dependent | sin | 2 | NA |
| 503 | 136.27 | humidity | 60 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 505 | 136.27 | humidity | 60 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 507 | 136.27 | radiation | 20 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 562 | 136.27 | humidity | 60 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 564 | 136.27 | humidity | 60 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 566 | 136.27 | radiation | 20 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 644 | 136.35 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 649 | 136.35 | radiation | 1 | 10 | < th | dose dependent | rect. | 4 | 23 |
| 650 | 136.36 | wind | 5 | 4320 | > th | dose independent | rect. | 12 | 2 |
| 666 | 136.39 | radiation | 1 | 720 | < th | dose independent | rect. | 8 | 18 |
| 681 | 136.43 | temperature | 20 | 10 | > th | dose independent | rect. | 1 | 2 |
| 712 | 136.45 | wind | 7 | 90 | > th | dose independent | rect. | 14 | 1 |
| 729 | 136.47 | humidity | 80 | 10 | > th | dose dependent | rect. | 12 | 1 |
| 732 | 136.48 | wind | 5 | 4320 | < th | dose independent | rect. | 12 | 2 |
| 738 | 136.49 | wind | 1 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 746 | 136.51 | humidity | 80 | 10 | > th | dose dependent | rect. | 24 | 17 |
| 748 | 136.52 | radiation | 1 | 720 | < th | dose dependent | rect. | 8 | 18 |
| 767 | 136.58 | humidity | 90 | 90 | > th | dose independent | rect. | 24 | 1 |
| 772 | 136.58 | radiation | 1 | 10 | > th | dose independent | rect. | 15 | 23 |
| 775 | 136.59 | wind | 1 | 10 | > th | dose independent | rect. | 4 | 1 |
| 785 | 136.62 | radiation | 1 | 720 | < th | dose independent | rect. | 14 | 12 |
| 786 | 136.62 | humidity | 80 | 10 | > th | dose dependent | rect. | 11 | 6 |
| 793 | 136.63 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 9 | 1 |
| 800 | 136.63 | humidity | 80 | 270 | > th | dose dependent | rect. | 12 | 1 |
| 832 | 136.70 | wind | 5 | 90 | > th | dose dependent | rect. | 14 | 1 |
| 833 | 136.70 | wind | 7 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 871 | 136.78 | radiation | 1 | 10 | < th | dose independent | sin | 2 | NA |
| 872 | 136.78 | atmosphere | 1005 | 10 | < th | dose independent | rect. | 1 | 1 |
| 882 | 136.78 | radiation | 1 | 720 | > th | dose independent | rect. | 8 | 9 |
| 898 | 136.81 | humidity | 60 | 14400 | > th | dose independent | rect. | 2 | 6 |
| 923 | 136.84 | radiation | 1 | 10 | < th | dose dependent | rect. | 4 | 8 |
| 925 | 136.84 | radiation | 1 | 720 | < th | dose dependent | rect. | 14 | 12 |
| 949 | 136.90 | wind | 7 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 959 | 136.91 | radiation | 1 | 10 | < th | dose dependent | rect. | 19 | 22 |
| 980 | 136.95 | radiation | 1 | 10 | < th | dose independent | rect. | 19 | 22 |