Os01g0393000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0393000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 64.68 | 0.378 | 9.97 | -1.04 | 0.814 | -0.416 | -0.0403 | -2.07 | -0.378 | 0.0102 | 24.7 | 2582 | -- | -- |
| 69.28 | 0.388 | 10 | -1.65 | 0.819 | -0.513 | 0.158 | -- | -0.511 | 0.212 | 25.24 | 3831 | -- | -- |
| 64.68 | 0.375 | 9.97 | -1.04 | 0.814 | -0.416 | -- | -2.06 | -0.378 | 0.0133 | 24.71 | 2581 | -- | -- |
| 68.48 | 0.385 | 10 | -1.68 | 0.8 | -0.554 | -- | -- | -0.523 | 0.044 | 24.9 | 2520 | -- | -- |
| 104.37 | 0.476 | 9.99 | -0.902 | -- | -0.595 | -- | -2.41 | -0.4 | -- | 24.71 | 2461 | -- | -- |
| 76.13 | 0.409 | 10 | -1.46 | 0.891 | -- | 0.19 | -- | -0.405 | 0.177 | -- | -- | -- | -- |
| 76.28 | 0.409 | 10 | -1.47 | 0.89 | -- | -- | -- | -0.406 | 0.166 | -- | -- | -- | -- |
| 105.22 | 0.478 | 10 | -1.74 | -- | -0.772 | -- | -- | -0.568 | -- | 25.3 | 2415 | -- | -- |
| 131.8 | 0.538 | 9.97 | -- | 0.795 | 0.13 | -- | -- | -0.22 | 23.8 | 26.76 | 593 | -- | -- |
| 126.15 | 0.525 | 9.99 | -1.44 | -- | -- | -- | -- | -0.392 | -- | -- | -- | -- | -- |
| 132.88 | 0.539 | 9.97 | -- | 0.87 | -- | -- | -- | -0.242 | 0.0741 | -- | -- | -- | -- |
| 162.15 | 0.595 | 9.93 | -- | -- | 0.418 | -- | -- | -0.124 | -- | 25.8 | 922 | -- | -- |
| 180.59 | 0.627 | 9.96 | -- | -- | -- | -- | -- | -0.233 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 60.13 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 5 | 21 |
| 3 | 61.29 | temperature | 20 | 270 | > th | dose dependent | rect. | 22 | 6 |
| 5 | 61.70 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 5 | 19 |
| 20 | 62.83 | temperature | 25 | 4320 | < th | dose independent | rect. | 22 | 4 |
| 21 | 62.84 | temperature | 25 | 4320 | > th | dose independent | rect. | 22 | 3 |
| 24 | 62.91 | temperature | 10 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 25 | 62.91 | temperature | 30 | 4320 | < th | dose dependent | rect. | 23 | 1 |
| 26 | 62.93 | temperature | 25 | 4320 | < th | dose independent | rect. | 23 | 2 |
| 107 | 63.51 | humidity | 70 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 114 | 63.53 | temperature | 15 | 90 | > th | dose dependent | rect. | 9 | 20 |
| 159 | 63.67 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 5 | 21 |
| 298 | 64.04 | temperature | 10 | 270 | > th | dose dependent | rect. | 18 | 23 |
| 327 | 64.11 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 22 |
| 350 | 64.17 | temperature | 30 | 4320 | < th | dose dependent | sin | 12 | NA |
| 372 | 64.20 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 5 | 19 |
| 380 | 64.22 | temperature | 10 | 4320 | > th | dose dependent | sin | 12 | NA |
| 388 | 64.23 | temperature | 25 | 720 | > th | dose independent | rect. | 16 | 19 |
| 392 | 64.24 | temperature | 25 | 1440 | > th | dose independent | rect. | 23 | 13 |
| 397 | 64.25 | temperature | 20 | 270 | > th | dose dependent | sin | 9 | NA |
| 410 | 64.26 | temperature | 10 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 411 | 64.27 | temperature | 25 | 1440 | < th | dose independent | rect. | 23 | 13 |
| 424 | 64.29 | temperature | 25 | 1440 | < th | dose independent | rect. | 24 | 11 |
| 436 | 64.30 | temperature | 10 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 550 | 64.47 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 18 |
| 551 | 64.47 | temperature | 20 | 720 | > th | dose dependent | rect. | 16 | 20 |
| 561 | 64.48 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 578 | 64.51 | wind | 3 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 582 | 64.51 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 12 |
| 615 | 64.55 | temperature | 25 | 4320 | < th | dose independent | sin | 12 | NA |
| 617 | 64.55 | temperature | 20 | 1440 | > th | dose dependent | sin | 8 | NA |
| 665 | 64.60 | temperature | 10 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 722 | 64.66 | temperature | 25 | 1440 | < th | dose independent | sin | 7 | NA |
| 735 | 64.67 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 21 |
| 744 | 64.69 | temperature | 25 | 1440 | > th | dose independent | sin | 7 | NA |
| 803 | 64.74 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 2 |
| 908 | 64.81 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 18 |
| 932 | 64.84 | temperature | 25 | 4320 | > th | dose independent | sin | 12 | NA |
| 952 | 64.85 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 23 |