Os01g0392800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0392800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.53 | 0.284 | 11.6 | 0.0924 | 1.14 | -1.1 | 0.169 | -3.45 | -0.129 | 18.3 | 0.7735 | 1390 | -- | -- |
| 41.89 | 0.301 | 11.7 | -0.181 | 0.978 | -0.479 | 0.355 | -- | -0.204 | 18.8 | 17.75 | 2265 | -- | -- |
| 36.57 | 0.282 | 11.6 | 0.0961 | 1.15 | -1.15 | -- | -3.59 | -0.127 | 18.3 | 0.6816 | 1388 | -- | -- |
| 41.89 | 0.301 | 11.7 | -0.16 | 1.05 | -0.422 | -- | -- | -0.216 | 18.7 | 16.99 | 5199 | -- | -- |
| 41.71 | 0.301 | 11.7 | -0.157 | -- | -1.63 | -- | -1.09 | -0.224 | -- | 4.559 | 838 | -- | -- |
| 44.44 | 0.313 | 11.7 | -0.167 | 1.18 | -- | 0.327 | -- | -0.137 | 18.8 | -- | -- | -- | -- |
| 44.71 | 0.313 | 11.7 | -0.172 | 1.19 | -- | -- | -- | -0.136 | 18.8 | -- | -- | -- | -- |
| 41.74 | 0.301 | 11.7 | -0.272 | -- | -1.62 | -- | -- | -0.216 | -- | 4.1 | 838 | -- | -- |
| 41.43 | 0.3 | 11.7 | -- | 1.21 | -0.332 | -- | -- | -0.174 | 18.7 | 6.66 | 11236 | -- | -- |
| 118.18 | 0.508 | 11.7 | -0.199 | -- | -- | -- | -- | -0.159 | -- | -- | -- | -- | -- |
| 45.49 | 0.316 | 11.7 | -- | 1.19 | -- | -- | -- | -0.116 | 18.8 | -- | -- | -- | -- |
| 43.61 | 0.308 | 11.7 | -- | -- | -1.61 | -- | -- | -0.186 | -- | 4.815 | 833 | -- | -- |
| 119.23 | 0.51 | 11.7 | -- | -- | -- | -- | -- | -0.137 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 34.31 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 2 | 34.49 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 7 | 4 |
| 3 | 34.52 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 21 | 14 |
| 8 | 34.71 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 6 | 21 |
| 13 | 34.83 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 8 | 20 |
| 15 | 34.85 | temperature | 25.0 | 270 | > th | dose dependent | sin | 8 | NA |
| 50 | 35.60 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 22 | 13 |
| 147 | 36.59 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 16 | 2 |
| 148 | 36.61 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 16 | 2 |
| 149 | 36.61 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 16 | 2 |
| 155 | 36.64 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 6 | 2 |
| 156 | 36.64 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 13 | 5 |
| 158 | 36.66 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 6 | 2 |
| 161 | 36.68 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 20 | 13 |
| 170 | 36.71 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 179 | 36.72 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 2 | 13 |
| 183 | 36.73 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 184 | 36.73 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 15 | 3 |
| 187 | 36.74 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 17 | 5 |
| 189 | 36.75 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 190 | 36.75 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 17 | 5 |
| 230 | 36.82 | radiation | 40.0 | 270 | > th | dose dependent | rect. | 14 | 20 |
| 236 | 36.84 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 262 | 36.88 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 271 | 36.89 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 272 | 36.89 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 274 | 36.89 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 20 | 21 |
| 323 | 36.96 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 17 | 11 |
| 324 | 36.96 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 17 | 13 |
| 326 | 36.96 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 17 | 14 |
| 333 | 36.97 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 20 | 4 |
| 348 | 36.98 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 352 | 36.98 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 18 | 4 |
| 372 | 36.99 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 17 | 16 |
| 373 | 36.99 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 17 | 16 |
| 374 | 36.99 | temperature | 20.0 | 14400 | > th | dose dependent | sin | 12 | NA |
| 378 | 36.99 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 18 | 3 |
| 391 | 36.99 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 18 | 6 |
| 413 | 37.00 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 437 | 37.00 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 5 | 13 |
| 449 | 37.01 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 475 | 37.01 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 4 | 13 |
| 494 | 37.02 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 516 | 37.02 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 4 | 11 |
| 565 | 37.03 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 17 | 22 |
| 694 | 37.07 | radiation | 1.0 | 720 | < th | dose independent | rect. | 20 | 15 |
| 700 | 37.07 | radiation | 1.0 | 720 | < th | dose independent | rect. | 20 | 20 |
| 738 | 37.07 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 17 | 16 |
| 750 | 37.08 | radiation | 1.0 | 720 | < th | dose independent | rect. | 20 | 13 |
| 871 | 37.10 | temperature | 25.0 | 14400 | > th | dose independent | sin | 14 | NA |
| 873 | 37.10 | temperature | 25.0 | 14400 | < th | dose independent | sin | 14 | NA |
| 943 | 37.11 | radiation | 1.0 | 720 | < th | dose independent | rect. | 20 | 11 |
| 952 | 37.11 | temperature | 30.0 | 14400 | < th | dose dependent | sin | 13 | NA |