Os01g0391800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, putative npRNA.
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Os01g0391800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, putative npRNA.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 145.49 | 0.567 | 5.73 | -0.316 | 0.0182 | -1.18 | 0.528 | -1.15 | 0.515 | 6.75 | 29.5 | 15 | -- | -- |
| 146.83 | 0.569 | 5.75 | -0.509 | 0.0311 | -1.14 | 0.551 | -- | 0.471 | 9.78 | 29.5 | 15 | -- | -- |
| 146.12 | 0.567 | 5.73 | -0.294 | 0.0396 | -1.12 | -- | -1.11 | 0.528 | 12.5 | 29.5 | 15 | -- | -- |
| 147.87 | 0.566 | 5.75 | -0.475 | 0.0478 | -1.11 | -- | -- | 0.479 | 11.6 | 29.6 | 14 | -- | -- |
| 146.19 | 0.566 | 5.73 | -0.302 | -- | -1.16 | -- | -1.12 | 0.52 | -- | 29.5 | 15 | -- | -- |
| 164.15 | 0.601 | 5.7 | -0.229 | 0.421 | -- | 0.473 | -- | 0.697 | 13.8 | -- | -- | -- | -- |
| 164.99 | 0.602 | 5.7 | -0.214 | 0.424 | -- | -- | -- | 0.7 | 14 | -- | -- | -- | -- |
| 147.97 | 0.569 | 5.75 | -0.491 | -- | -1.16 | -- | -- | 0.47 | -- | 29.61 | 12 | -- | -- |
| 153.33 | 0.58 | 5.73 | -- | 0.122 | -0.916 | -- | -- | 0.567 | 13.8 | 29.6 | 14 | -- | -- |
| 175.79 | 0.62 | 5.7 | -0.232 | -- | -- | -- | -- | 0.69 | -- | -- | -- | -- | -- |
| 166.19 | 0.603 | 5.69 | -- | 0.428 | -- | -- | -- | 0.724 | 14.1 | -- | -- | -- | -- |
| 153.82 | 0.58 | 5.73 | -- | -- | -1.03 | -- | -- | 0.547 | -- | 29.7 | 10 | -- | -- |
| 177.21 | 0.621 | 5.7 | -- | -- | -- | -- | -- | 0.716 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 139.52 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 24 | 23 |
| 2 | 139.93 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 9 |
| 8 | 140.23 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 24 | 23 |
| 11 | 141.19 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 1 | 20 |
| 13 | 141.40 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 7 |
| 26 | 141.85 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 11 | 7 |
| 31 | 141.97 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 11 |
| 32 | 141.97 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 13 |
| 52 | 142.09 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 17 |
| 84 | 142.31 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 13 |
| 85 | 142.31 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 15 |
| 87 | 142.32 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 11 |
| 88 | 142.32 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 13 |
| 111 | 142.44 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 19 |
| 112 | 142.45 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 17 |
| 241 | 143.03 | radiation | 1.0 | 1440 | < th | dose independent | sin | 18 | NA |
| 273 | 143.26 | radiation | 1.0 | 1440 | < th | dose dependent | sin | 19 | NA |
| 299 | 143.46 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 14 | 7 |
| 304 | 143.47 | radiation | 1.0 | 1440 | > th | dose independent | sin | 18 | NA |
| 338 | 143.72 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 11 | 10 |
| 345 | 143.79 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 362 | 143.85 | wind | 7.0 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 403 | 144.17 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 15 | 4 |
| 406 | 144.20 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 11 | 10 |
| 413 | 144.24 | wind | 5.0 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 419 | 144.28 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 14 | 6 |
| 474 | 144.45 | wind | 7.0 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 480 | 144.49 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 491 | 144.54 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 546 | 144.94 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 554 | 145.07 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 581 | 145.26 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 605 | 145.42 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 611 | 145.48 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 20 | 2 |
| 612 | 145.48 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 20 | 2 |
| 624 | 145.56 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 635 | 145.62 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 654 | 145.75 | temperature | 30.0 | 10 | < th | dose dependent | no | NA | NA |
| 695 | 145.96 | wind | 5.0 | 14400 | > th | dose independent | rect. | 13 | 8 |
| 731 | 146.14 | wind | 5.0 | 14400 | > th | dose independent | rect. | 11 | 10 |
| 754 | 146.24 | temperature | 25.0 | 10 | < th | dose independent | rect. | 5 | 15 |
| 756 | 146.25 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 772 | 146.32 | temperature | 25.0 | 10 | < th | dose independent | rect. | 2 | 19 |
| 794 | 146.42 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 801 | 146.46 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 819 | 146.52 | temperature | 25.0 | 1440 | < th | dose independent | sin | 19 | NA |
| 837 | 146.57 | wind | 5.0 | 14400 | > th | dose dependent | rect. | 14 | 4 |
| 844 | 146.61 | wind | 5.0 | 14400 | < th | dose independent | rect. | 11 | 10 |
| 857 | 146.65 | wind | 7.0 | 14400 | < th | dose independent | rect. | 14 | 4 |
| 860 | 146.67 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 891 | 146.76 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 9 | 3 |
| 911 | 146.81 | wind | 5.0 | 14400 | > th | dose independent | rect. | 11 | 14 |
| 922 | 146.83 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 937 | 146.87 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 947 | 146.90 | wind | 7.0 | 14400 | > th | dose independent | rect. | 14 | 4 |
| 968 | 146.97 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 20 | 1 |
| 972 | 146.98 | temperature | 25.0 | 1440 | > th | dose independent | sin | 19 | NA |
| 982 | 147.01 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 24 | 1 |
| 990 | 147.05 | wind | 7.0 | 43200 | > th | dose independent | rect. | 17 | 2 |