Os01g0390600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os01g0390600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 62.45 | 0.371 | 8.17 | 0.726 | 1.01 | -0.831 | 0.101 | 1.61 | 0.636 | 22 | 25.48 | 1351 | -- | -- |
| 66.15 | 0.379 | 8.2 | 0.458 | 0.938 | -0.679 | 0.0308 | -- | 0.581 | 21.3 | 23.3 | 1571 | -- | -- |
| 62.29 | 0.368 | 8.17 | 0.751 | 1.01 | -0.849 | -- | 1.73 | 0.618 | 21.9 | 25.7 | 1364 | -- | -- |
| 64.39 | 0.374 | 8.22 | 0.3 | 0.981 | -0.602 | -- | -- | 0.474 | 21.5 | 23.2 | 1584 | -- | -- |
| 121.2 | 0.513 | 8.15 | 0.798 | -- | -0.769 | -- | 1.8 | 0.598 | -- | 24.8 | 1471 | -- | -- |
| 80.21 | 0.42 | 8.28 | 0.0153 | 0.978 | -- | 0.129 | -- | 0.22 | 21.6 | -- | -- | -- | -- |
| 80.27 | 0.42 | 8.28 | 0.0106 | 0.978 | -- | -- | -- | 0.22 | 21.6 | -- | -- | -- | -- |
| 114.32 | 0.5 | 8.21 | 0.237 | -- | -0.545 | -- | -- | 0.431 | -- | 23.3 | 1564 | -- | -- |
| 65.79 | 0.378 | 8.23 | -- | 0.979 | -0.572 | -- | -- | 0.42 | 21.6 | 23.1 | 1571 | -- | -- |
| 136.73 | 0.546 | 8.26 | 0.0179 | -- | -- | -- | -- | 0.218 | -- | -- | -- | -- | -- |
| 80.27 | 0.419 | 8.28 | -- | 0.978 | -- | -- | -- | 0.219 | 21.6 | -- | -- | -- | -- |
| 115.72 | 0.503 | 8.22 | -- | -- | -0.513 | -- | -- | 0.393 | -- | 23.3 | 1564 | -- | -- |
| 136.74 | 0.546 | 8.26 | -- | -- | -- | -- | -- | 0.216 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 60.02 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 16 | 60.71 | temperature | 30 | 1440 | < th | dose dependent | rect. | 12 | 6 |
| 19 | 60.73 | temperature | 30 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 132 | 61.86 | temperature | 25 | 1440 | > th | dose independent | rect. | 11 | 13 |
| 157 | 61.99 | temperature | 25 | 1440 | > th | dose independent | sin | 18 | NA |
| 190 | 62.12 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 199 | 62.15 | temperature | 25 | 1440 | < th | dose independent | rect. | 11 | 13 |
| 210 | 62.19 | temperature | 20 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 222 | 62.23 | temperature | 25 | 1440 | < th | dose independent | sin | 18 | NA |
| 240 | 62.29 | temperature | 25 | 1440 | < th | dose independent | rect. | 13 | 10 |
| 265 | 62.36 | temperature | 20 | 1440 | > th | dose dependent | sin | 19 | NA |
| 383 | 62.67 | temperature | 30 | 1440 | < th | dose dependent | sin | 20 | NA |
| 434 | 62.77 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 627 | 63.10 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 17 |
| 741 | 63.25 | temperature | 25 | 1440 | > th | dose independent | no | NA | NA |
| 818 | 63.33 | temperature | 25 | 1440 | > th | dose independent | rect. | 19 | 23 |
| 845 | 63.37 | temperature | 25 | 1440 | > th | dose independent | rect. | 21 | 23 |
| 943 | 63.49 | temperature | 25 | 1440 | < th | dose independent | no | NA | NA |
| 945 | 63.49 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 952 | 63.49 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 23 |
| 983 | 63.53 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 23 |