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Os01g0388200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.57 (0.0382) R2 : 0.261
β1 : 1.47 (0.14) R2dD : 0.187 R2D : 0.0879
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.727 (0.0815) R2dN8 : 0.173 R2N8 : 0.0737
σ : 0.716
deviance : 234.99
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
203.28 0.67 5.58 1.29 0.582 1.57 -0.365 3.81 0.806 14.8 1.826 1517 -- --
207.8 0.671 5.52 1.67 0.661 1.24 -1.15 -- 0.924 14.3 4.32 1568 -- --
203.45 0.664 5.58 1.27 0.637 1.57 -- 3.93 0.815 14.9 2.063 1536 -- --
211.79 0.678 5.54 1.69 0.488 1.08 -- -- 0.922 15.3 4.202 1499 -- --
216.76 0.686 5.6 1.22 -- 1.53 -- 4.05 0.777 -- 1.728 1464 -- --
224.61 0.703 5.57 1.51 0.387 -- -0.786 -- 0.742 15.2 -- -- -- --
225.16 0.703 5.57 1.49 0.43 -- -- -- 0.738 16.6 -- -- -- --
221.36 0.693 5.54 1.61 -- 0.874 -- -- 0.875 -- 4.628 1429 -- --
271.24 0.767 5.59 -- 0.5 0.802 -- -- 0.703 15.4 10 1537 -- --
234.99 0.716 5.57 1.47 -- -- -- -- 0.727 -- -- -- -- --
283.74 0.788 5.61 -- 0.403 -- -- -- 0.572 16.7 -- -- -- --
277.51 0.776 5.59 -- -- 0.791 -- -- 0.711 -- 10 2855 -- --
292.34 0.798 5.61 -- -- -- -- -- 0.563 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 200.37 radiation 1.0 10 > th dose dependent rect. 18 12
2 201.24 radiation 1.0 10 > th dose dependent rect. 5 1
13 201.41 temperature 20.0 30 > th dose independent rect. 9 17
16 202.19 radiation 20.0 1440 < th dose dependent rect. 14 1
18 202.62 humidity 70.0 43200 > th dose dependent rect. 13 12
20 202.70 humidity 70.0 43200 > th dose dependent rect. 14 10
21 202.75 humidity 70.0 43200 > th dose dependent sin 17 NA
24 202.87 radiation 1.0 1440 < th dose dependent rect. 10 7
25 202.89 radiation 1.0 1440 < th dose dependent rect. 12 5
29 203.10 humidity 70.0 43200 > th dose dependent rect. 12 14
51 203.54 humidity 70.0 43200 > th dose dependent rect. 7 20
53 203.56 atmosphere 1005.0 10 > th dose independent rect. 1 8
54 203.57 humidity 80.0 43200 < th dose independent rect. 24 20
58 203.62 humidity 70.0 43200 > th dose dependent rect. 4 22
60 203.65 temperature 20.0 270 > th dose independent rect. 17 8
67 203.74 humidity 50.0 10 > th dose dependent rect. 17 9
76 203.80 humidity 80.0 43200 > th dose independent rect. 24 20
92 203.94 atmosphere 1005.0 270 > th dose independent rect. 22 7
99 203.97 atmosphere 1005.0 10 > th dose dependent rect. 1 4
107 204.06 atmosphere 1005.0 270 > th dose independent rect. 22 9
115 204.11 radiation 10.0 1440 < th dose independent rect. 14 1
123 204.16 humidity 70.0 43200 > th dose dependent no NA NA
129 204.22 radiation 1.0 1440 > th dose dependent rect. 14 1
145 204.32 humidity 80.0 43200 > th dose independent rect. 8 18
147 204.33 humidity 90.0 720 < th dose independent rect. 20 3
149 204.34 humidity 80.0 43200 < th dose independent rect. 1 16
157 204.40 radiation 10.0 1440 > th dose independent rect. 14 1
165 204.45 humidity 80.0 43200 > th dose dependent rect. 20 4
171 204.52 temperature 20.0 10 > th dose independent rect. 20 6
172 204.52 humidity 80.0 43200 > th dose independent rect. 11 15
173 204.52 humidity 70.0 43200 > th dose dependent rect. 17 23
177 204.56 humidity 70.0 43200 > th dose dependent rect. 14 23
179 204.57 humidity 80.0 43200 < th dose independent rect. 2 14
192 204.66 humidity 80.0 43200 < th dose independent rect. 8 18
198 204.72 wind 7.0 10 < th dose dependent rect. 2 7
205 204.78 humidity 80.0 43200 > th dose independent rect. 1 17
208 204.79 radiation 1.0 30 < th dose dependent rect. 5 21
209 204.80 humidity 80.0 43200 < th dose independent sin 3 NA
214 204.82 humidity 90.0 720 < th dose dependent rect. 19 6
218 204.85 humidity 90.0 720 < th dose dependent rect. 20 3
221 204.86 humidity 80.0 43200 > th dose independent rect. 4 20
225 204.87 humidity 80.0 43200 < th dose independent rect. 3 12
241 204.96 humidity 80.0 43200 > th dose independent sin 3 NA
243 205.00 temperature 15.0 30 > th dose dependent rect. 2 7
245 205.01 humidity 80.0 43200 < th dose independent rect. 11 14
256 205.06 temperature 20.0 270 > th dose dependent rect. 2 1
259 205.07 humidity 80.0 43200 > th dose independent rect. 3 12
267 205.10 humidity 80.0 43200 > th dose independent rect. 2 14
270 205.12 radiation 10.0 10 < th dose independent rect. 2 9
274 205.14 humidity 70.0 1440 < th dose independent rect. 14 1
275 205.14 humidity 90.0 720 < th dose dependent rect. 17 9
278 205.15 humidity 80.0 43200 > th dose dependent rect. 21 2
290 205.22 humidity 90.0 720 < th dose dependent sin 13 NA
334 205.43 wind 5.0 30 < th dose independent rect. 2 7
336 205.44 humidity 90.0 720 < th dose dependent rect. 15 11
339 205.47 atmosphere 1005.0 30 > th dose independent rect. 1 4
361 205.52 humidity 70.0 1440 > th dose independent rect. 14 1
371 205.55 temperature 30.0 270 < th dose independent rect. 7 16
385 205.63 radiation 10.0 10 < th dose independent rect. 2 12
389 205.65 humidity 90.0 720 < th dose dependent rect. 17 14
396 205.67 temperature 20.0 270 > th dose dependent rect. 1 5
401 205.69 humidity 90.0 720 < th dose dependent rect. 15 16
409 205.72 radiation 20.0 1440 < th dose dependent rect. 12 15
435 205.83 humidity 80.0 43200 > th dose independent rect. 4 10
437 205.83 humidity 80.0 43200 < th dose independent rect. 5 19
439 205.83 radiation 20.0 1440 < th dose dependent rect. 12 8
443 205.83 radiation 1.0 30 < th dose dependent rect. 5 23
460 205.89 precipitation 0.1 10 < th dose independent rect. 2 7
464 205.89 precipitation 0.1 10 < th dose dependent rect. 2 7
492 205.97 radiation 1.0 30 < th dose independent rect. 5 21
503 206.00 humidity 80.0 43200 < th dose independent sin 18 NA
511 206.03 radiation 1.0 30 < th dose independent rect. 17 9
528 206.07 humidity 80.0 43200 > th dose independent sin 17 NA
531 206.07 atmosphere 1000.0 270 > th dose dependent rect. 23 8
537 206.09 humidity 70.0 30 > th dose independent rect. 17 9
547 206.11 humidity 70.0 43200 > th dose dependent sin 4 NA
548 206.11 humidity 50.0 720 > th dose dependent rect. 16 3
586 206.23 wind 1.0 43200 > th dose independent rect. 17 1
596 206.25 radiation 10.0 1440 > th dose independent rect. 12 3
602 206.28 wind 5.0 270 < th dose independent rect. 12 18
609 206.30 atmosphere 995.0 10 > th dose independent rect. 9 17
620 206.32 humidity 60.0 1440 > th dose dependent rect. 14 1
626 206.33 wind 9.0 4320 < th dose independent rect. 3 3
636 206.34 radiation 1.0 30 < th dose dependent rect. 15 11
643 206.36 radiation 1.0 30 < th dose dependent rect. 17 9
655 206.39 atmosphere 1005.0 10 > th dose independent rect. 13 16
675 206.43 radiation 1.0 30 < th dose dependent rect. 11 17
690 206.46 wind 1.0 43200 < th dose independent rect. 17 1
700 206.47 humidity 80.0 43200 < th dose independent rect. 4 10
722 206.51 radiation 1.0 30 < th dose dependent rect. 13 15
734 206.54 radiation 10.0 1440 < th dose dependent sin 18 NA
739 206.56 humidity 80.0 43200 > th dose independent rect. 13 11
764 206.61 atmosphere 1005.0 10 > th dose independent rect. 13 20
777 206.63 temperature 10.0 30 > th dose independent rect. 2 7
779 206.63 temperature 30.0 30 < th dose independent rect. 2 7
780 206.63 humidity 50.0 30 > th dose independent rect. 2 7
782 206.63 atmosphere 995.0 30 > th dose independent rect. 2 7
783 206.63 atmosphere 1015.0 30 < th dose independent rect. 2 7
792 206.64 temperature 10.0 1440 > th dose independent rect. 3 7
799 206.64 atmosphere 995.0 1440 > th dose independent rect. 3 7
803 206.64 temperature 10.0 1440 > th dose independent rect. 10 17
806 206.64 radiation 1.0 90 < th dose independent rect. 5 23
808 206.64 atmosphere 1000.0 270 > th dose dependent rect. 23 6
834 206.70 atmosphere 1000.0 270 > th dose independent rect. 5 7
839 206.70 atmosphere 1000.0 90 > th dose dependent rect. 1 7
857 206.73 temperature 30.0 30 < th dose independent rect. 9 17
887 206.79 radiation 1.0 1440 < th dose independent sin 23 NA
897 206.82 radiation 1.0 1440 > th dose independent sin 23 NA
911 206.83 radiation 30.0 1440 < th dose dependent rect. 20 9
916 206.84 atmosphere 1005.0 10 > th dose independent rect. 15 14
930 206.86 temperature 30.0 720 < th dose independent rect. 18 17
932 206.87 atmosphere 1005.0 720 > th dose independent rect. 19 6
938 206.88 atmosphere 1010.0 90 < th dose independent rect. 9 16
940 206.88 radiation 20.0 1440 > th dose independent rect. 12 19
951 206.90 atmosphere 1005.0 720 > th dose independent rect. 20 4
952 206.90 humidity 50.0 1440 > th dose dependent rect. 14 12
962 206.92 radiation 1.0 1440 < th dose dependent sin 23 NA
987 206.95 wind 9.0 270 < th dose dependent rect. 11 20