Os01g0386700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to protein kinase-like protein [Oryza sativa (japonica cultivar-group)].
FiT-DB / Search/ Help/ Sample detail
|
Os01g0386700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to protein kinase-like protein [Oryza sativa (japonica cultivar-group)].
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 51.1 | 0.336 | 13.9 | -1.81 | 0.764 | -1.06 | 0.0811 | 0.212 | 0.0692 | 23.5 | 25.93 | 169 | -- | -- |
| 51.14 | 0.333 | 13.9 | -1.78 | 0.761 | -1.08 | 0.109 | -- | 0.0818 | 23.4 | 25.53 | 169 | -- | -- |
| 51.13 | 0.333 | 13.9 | -1.82 | 0.761 | -1.06 | -- | 0.234 | 0.0683 | 23.5 | 25.87 | 171 | -- | -- |
| 51.19 | 0.333 | 13.9 | -1.78 | 0.759 | -1.08 | -- | -- | 0.0861 | 23.4 | 25.36 | 168 | -- | -- |
| 69.45 | 0.388 | 13.9 | -1.97 | -- | -1.18 | -- | 0.52 | 0.0163 | -- | 28.11 | 775 | -- | -- |
| 68.04 | 0.387 | 13.8 | -1.51 | 0.665 | -- | 0.0363 | -- | 0.307 | 22.4 | -- | -- | -- | -- |
| 68.05 | 0.386 | 13.8 | -1.51 | 0.665 | -- | -- | -- | 0.307 | 22.4 | -- | -- | -- | -- |
| 69.99 | 0.39 | 13.9 | -1.85 | -- | -1.22 | -- | -- | 0.0441 | -- | 27.6 | 771 | -- | -- |
| 125.67 | 0.525 | 13.8 | -- | 0.709 | -0.433 | -- | -- | 0.428 | 22.5 | 23.1 | 6 | -- | -- |
| 95.08 | 0.456 | 13.8 | -1.5 | -- | -- | -- | -- | 0.31 | -- | -- | -- | -- | -- |
| 128.21 | 0.53 | 13.8 | -- | 0.656 | -- | -- | -- | 0.476 | 22.3 | -- | -- | -- | -- |
| 149.89 | 0.57 | 13.8 | -- | -- | -0.486 | -- | -- | 0.387 | -- | 28.2 | 739 | -- | -- |
| 154.41 | 0.58 | 13.8 | -- | -- | -- | -- | -- | 0.476 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 51.09 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 2 | 51.11 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 8 | 22 |
| 10 | 51.52 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 12 | 51.56 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 21 | 23 |
| 13 | 51.58 | temperature | 25.0 | 90 | < th | dose dependent | no | NA | NA |
| 18 | 51.62 | temperature | 20.0 | 90 | > th | dose independent | rect. | 7 | 22 |
| 36 | 51.86 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 44 | 51.89 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 53 | 52.01 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 20 | 15 |
| 60 | 52.09 | temperature | 30.0 | 270 | < th | dose dependent | sin | 9 | NA |
| 68 | 52.22 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 18 | 17 |
| 91 | 52.32 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 94 | 52.36 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 7 | 22 |
| 108 | 52.45 | temperature | 30.0 | 90 | < th | dose dependent | sin | 7 | NA |
| 127 | 52.55 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 17 | 20 |
| 135 | 52.58 | temperature | 10.0 | 270 | > th | dose dependent | sin | 9 | NA |
| 180 | 52.87 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 10 | 2 |
| 198 | 52.96 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 10 | 2 |
| 250 | 53.23 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 8 | 7 |
| 273 | 53.31 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 274 | 53.32 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 8 | 7 |
| 276 | 53.32 | temperature | 20.0 | 90 | > th | dose independent | rect. | 17 | 22 |
| 332 | 53.56 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 400 | 53.80 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 3 |
| 403 | 53.80 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 3 |
| 422 | 53.87 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 432 | 53.90 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 3 |
| 435 | 53.91 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 8 | 2 |
| 444 | 53.93 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 3 |
| 500 | 54.07 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 520 | 54.10 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 17 | 6 |
| 543 | 54.16 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 548 | 54.19 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 1 | 3 |
| 575 | 54.23 | temperature | 25.0 | 14400 | > th | dose independent | sin | 1 | NA |
| 596 | 54.27 | temperature | 25.0 | 14400 | < th | dose independent | sin | 1 | NA |
| 606 | 54.28 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 11 | 1 |
| 608 | 54.28 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 5 | 19 |
| 623 | 54.30 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 630 | 54.31 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 689 | 54.39 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 16 | 13 |
| 718 | 54.43 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 4 | 9 |
| 778 | 54.50 | temperature | 20.0 | 270 | > th | dose independent | rect. | 18 | 17 |
| 780 | 54.50 | temperature | 25.0 | 1440 | < th | dose dependent | sin | 14 | NA |
| 785 | 54.51 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 826 | 54.55 | wind | 9.0 | 14400 | < th | dose independent | rect. | 3 | 10 |
| 858 | 54.58 | wind | 9.0 | 14400 | > th | dose independent | rect. | 4 | 8 |
| 869 | 54.59 | wind | 9.0 | 14400 | < th | dose independent | rect. | 4 | 8 |
| 898 | 54.62 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 23 | 14 |
| 909 | 54.63 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 12 | 2 |
| 951 | 54.67 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 977 | 54.70 | wind | 9.0 | 14400 | < th | dose independent | rect. | 23 | 14 |