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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0385600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Homeodomain-like containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.11 (0.0197) R2 : 0.00218
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0413 (0.0414) R2dN8 : 0.00282 R2N8 : 0.00218
σ : 0.37
deviance : 62.87
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
60.81 0.366 3.08 0.116 0.102 -0.348 0.226 1.23 -0.0518 12.4 49.98 4292 -- --
61.62 0.368 3.11 0.0485 0.123 -0.175 0.227 -- -0.0384 12.7 49.98 4292 -- --
61.02 0.364 3.08 0.125 0.101 -0.346 -- 1.21 -0.05 12.5 50 4292 -- --
61.79 0.366 3.11 0.0655 0.0911 0.0947 -- -- -0.0358 12.7 45.02 3109 -- --
61.65 0.366 3.08 0.139 -- -0.405 -- 1.33 -0.0576 -- 49.63 4300 -- --
61.84 0.369 3.11 0.0374 0.115 -- 0.194 -- -0.0358 12.5 -- -- -- --
62 0.369 3.11 0.0449 0.115 -- -- -- -0.0348 12.6 -- -- -- --
62.16 0.367 3.11 -0.0291 -- 0.178 -- -- -0.0311 -- 38.91 8231 -- --
61.33 0.365 3.11 -- 0.117 0.171 -- -- -0.0269 12.5 35.73 8405 -- --
62.83 0.37 3.11 0.0409 -- -- -- -- -0.0368 -- -- -- -- --
62.06 0.369 3.11 -- 0.114 -- -- -- -0.0398 12.6 -- -- -- --
62.18 0.367 3.11 -- -- 0.166 -- -- -0.0287 -- 37.56 7581 -- --
62.87 0.37 3.11 -- -- -- -- -- -0.0413 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 56.22 wind 7.0 30 < th dose dependent rect. 14 1
2 56.29 wind 1.0 30 < th dose dependent rect. 13 11
3 56.30 wind 1.0 30 < th dose dependent rect. 11 13
10 56.48 humidity 70.0 30 < th dose independent rect. 14 1
12 56.48 radiation 20.0 30 > th dose independent rect. 14 1
13 56.50 humidity 60.0 30 > th dose independent rect. 14 1
16 56.54 atmosphere 1005.0 30 > th dose independent rect. 14 1
17 56.57 temperature 30.0 30 < th dose independent rect. 14 1
19 56.59 atmosphere 1000.0 30 > th dose dependent rect. 14 1
21 56.60 temperature 25.0 30 > th dose independent rect. 14 1
24 56.60 radiation 40.0 30 < th dose independent rect. 14 1
25 56.62 wind 7.0 30 < th dose independent rect. 14 1
27 56.62 temperature 10.0 30 > th dose dependent rect. 14 1
34 56.64 temperature 10.0 30 > th dose independent rect. 14 1
36 56.64 atmosphere 995.0 30 > th dose independent rect. 14 1
37 56.64 atmosphere 1010.0 30 < th dose independent rect. 14 1
40 56.64 precipitation 0.1 30 < th dose independent rect. 14 1
41 56.64 temperature 10.0 30 > th dose independent rect. 15 23
42 56.64 precipitation 0.1 30 < th dose dependent rect. 14 1
46 56.67 humidity 90.0 30 < th dose dependent rect. 14 1
48 56.68 radiation 1.0 30 > th dose dependent rect. 14 1
51 56.73 temperature 10.0 1440 > th dose independent rect. 15 1
56 56.73 temperature 10.0 1440 > th dose independent rect. 16 23
60 56.77 atmosphere 1015.0 30 < th dose dependent rect. 14 1
68 56.91 humidity 50.0 30 > th dose dependent rect. 14 1
72 56.98 wind 3.0 30 > th dose dependent rect. 14 1
74 57.00 wind 5.0 30 > th dose independent rect. 14 1
78 57.04 wind 1.0 30 > th dose independent rect. 14 1
101 57.27 wind 9.0 30 < th dose independent rect. 15 23
108 57.48 wind 1.0 30 < th dose dependent rect. 23 1
111 57.72 wind 1.0 30 < th dose dependent rect. 21 3
132 58.01 wind 1.0 270 < th dose dependent rect. 21 2
141 58.31 wind 1.0 270 < th dose independent rect. 21 2
142 58.40 wind 1.0 30 < th dose dependent sin 19 NA
148 58.64 wind 1.0 270 < th dose dependent rect. 18 5
155 58.74 wind 1.0 270 < th dose dependent rect. 13 10
172 58.76 wind 1.0 10 < th dose independent rect. 11 7
177 58.76 wind 1.0 10 < th dose independent rect. 8 10
188 58.80 radiation 40.0 30 < th dose dependent rect. 14 1
194 58.90 wind 1.0 10 < th dose independent rect. 11 5
209 58.94 humidity 80.0 30 > th dose independent rect. 11 2
215 58.99 wind 1.0 10 < th dose independent rect. 11 3
256 59.07 wind 1.0 10 > th dose independent sin 21 NA
270 59.17 wind 1.0 90 < th dose independent rect. 9 15
281 59.18 humidity 70.0 10 > th dose dependent rect. 12 1
288 59.22 atmosphere 1005.0 90 > th dose independent rect. 11 4
289 59.24 wind 1.0 90 < th dose independent rect. 12 12
290 59.24 wind 1.0 10 < th dose dependent rect. 14 4
293 59.24 wind 1.0 10 < th dose dependent rect. 11 7
299 59.24 wind 1.0 10 < th dose dependent rect. 8 10
307 59.25 humidity 80.0 270 > th dose independent rect. 11 1
315 59.27 wind 1.0 10 < th dose dependent rect. 8 8
362 59.35 wind 1.0 10 < th dose dependent rect. 14 2
368 59.36 wind 1.0 90 < th dose dependent rect. 13 3
371 59.37 wind 1.0 10 < th dose independent sin 21 NA
374 59.37 wind 1.0 270 < th dose independent rect. 18 5
384 59.39 radiation 30.0 30 > th dose independent sin 13 NA
385 59.39 radiation 30.0 30 < th dose independent sin 13 NA
443 59.45 wind 3.0 30 > th dose dependent rect. 20 1
444 59.46 atmosphere 1005.0 10 > th dose independent rect. 20 1
452 59.47 wind 1.0 10 > th dose independent rect. 10 10
466 59.49 wind 1.0 90 < th dose independent sin 20 NA
468 59.49 wind 1.0 90 < th dose independent rect. 9 7
474 59.50 wind 1.0 90 < th dose independent rect. 9 5
480 59.50 radiation 10.0 43200 < th dose dependent rect. 21 1
491 59.51 humidity 90.0 10 < th dose dependent rect. 20 1
497 59.52 atmosphere 1000.0 30 > th dose independent rect. 21 23
499 59.52 atmosphere 1000.0 10 > th dose dependent rect. 20 1
504 59.53 temperature 20.0 10 > th dose independent rect. 20 1
506 59.53 temperature 25.0 270 > th dose independent rect. 20 1
507 59.53 humidity 90.0 10 < th dose independent rect. 20 1
512 59.53 temperature 30.0 30 < th dose dependent rect. 20 1
520 59.54 wind 1.0 30 > th dose independent rect. 20 1
522 59.54 wind 9.0 30 < th dose independent rect. 20 1
523 59.54 temperature 10.0 30 > th dose independent rect. 20 1
525 59.54 temperature 30.0 30 < th dose independent rect. 20 1
526 59.54 humidity 50.0 30 > th dose independent rect. 20 1
530 59.54 atmosphere 995.0 30 > th dose independent rect. 20 1
532 59.54 atmosphere 1010.0 30 < th dose independent rect. 20 1
534 59.54 radiation 1.0 30 < th dose independent rect. 20 1
539 59.54 precipitation 0.1 30 < th dose independent rect. 20 1
544 59.54 temperature 10.0 30 > th dose independent rect. 21 23
547 59.54 radiation 1.0 30 < th dose dependent rect. 20 1
558 59.54 precipitation 0.1 30 < th dose dependent rect. 20 1
559 59.55 temperature 10.0 1440 > th dose independent rect. 21 1
562 59.55 temperature 30.0 1440 < th dose independent rect. 21 1
566 59.55 humidity 50.0 1440 > th dose independent rect. 21 1
572 59.55 atmosphere 995.0 1440 > th dose independent rect. 21 1
573 59.55 radiation 1.0 1440 < th dose independent rect. 21 1
600 59.55 temperature 10.0 1440 > th dose independent rect. 22 23
604 59.55 temperature 10.0 30 > th dose dependent rect. 20 1
606 59.55 humidity 50.0 30 > th dose dependent rect. 20 1
617 59.56 wind 5.0 30 < th dose independent rect. 20 1
624 59.56 precipitation 0.1 30 < th dose independent rect. 21 23
625 59.56 wind 9.0 30 < th dose dependent rect. 20 1
634 59.56 precipitation 0.1 30 < th dose dependent rect. 21 23
644 59.57 atmosphere 1005.0 270 > th dose independent rect. 11 1
646 59.57 atmosphere 1015.0 1440 < th dose independent rect. 15 1
657 59.57 wind 5.0 30 < th dose dependent rect. 20 1
659 59.57 atmosphere 1015.0 30 < th dose dependent rect. 20 1
730 59.65 humidity 60.0 90 > th dose independent rect. 19 20
734 59.65 radiation 30.0 10 < th dose dependent rect. 21 23
751 59.68 wind 1.0 90 > th dose independent sin 20 NA
767 59.69 wind 9.0 30 < th dose independent rect. 21 23
781 59.71 humidity 90.0 4320 > th dose independent rect. 2 3
800 59.73 wind 1.0 10 > th dose independent rect. 8 12
801 59.73 temperature 30.0 30 < th dose dependent rect. 14 1
817 59.76 radiation 10.0 10 < th dose independent rect. 21 23
819 59.77 temperature 20.0 10 > th dose dependent rect. 20 4
856 59.82 humidity 70.0 270 > th dose dependent rect. 11 1
874 59.84 humidity 90.0 4320 < th dose dependent rect. 23 1
903 59.89 humidity 90.0 1440 < th dose independent rect. 2 2
909 59.89 precipitation 0.1 30 < th dose independent rect. 15 23
911 59.89 precipitation 0.1 30 < th dose dependent rect. 15 23
932 59.93 precipitation 0.1 14400 < th dose independent rect. 22 14
935 59.93 precipitation 0.1 14400 < th dose dependent rect. 22 14
936 59.94 precipitation 0.1 14400 > th dose independent rect. 22 14
940 59.94 precipitation 0.1 14400 > th dose independent rect. 23 16
943 59.94 temperature 30.0 10 < th dose independent rect. 21 23
944 59.94 atmosphere 995.0 30 > th dose independent rect. 15 23
953 59.95 humidity 80.0 4320 > th dose dependent rect. 23 1
978 59.96 humidity 90.0 1440 < th dose dependent rect. 1 4