Os01g0385400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : C4-dicarboxylate transporter/malic acid transport protein family protein.
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Os01g0385400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : C4-dicarboxylate transporter/malic acid transport protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 214.99 | 0.689 | 3.49 | -0.741 | 0.633 | 1.81 | -0.959 | -2.47 | 0.222 | 11.3 | 25.05 | 237 | -- | -- |
| 217.27 | 0.687 | 3.48 | -0.497 | 0.641 | 1.62 | -1.01 | -- | 0.195 | 11.5 | 23.28 | 260 | -- | -- |
| 218.86 | 0.689 | 3.49 | -0.803 | 0.639 | 1.81 | -- | -2.63 | 0.223 | 11.3 | 25.1 | 232 | -- | -- |
| 221.7 | 0.693 | 3.48 | -0.506 | 0.68 | 1.51 | -- | -- | 0.212 | 11.7 | 23.4 | 260 | -- | -- |
| 234.49 | 0.713 | 3.53 | -0.999 | -- | 2.24 | -- | -4.39 | 0.194 | -- | 25.51 | 87 | -- | -- |
| 260.01 | 0.756 | 3.44 | -0.189 | 1.06 | -- | -0.665 | -- | 0.422 | 14.2 | -- | -- | -- | -- |
| 261.62 | 0.757 | 3.44 | -0.207 | 1.06 | -- | -- | -- | 0.418 | 14.3 | -- | -- | -- | -- |
| 241.21 | 0.723 | 3.48 | -0.519 | -- | 1.86 | -- | -- | 0.279 | -- | 25.1 | 109 | -- | -- |
| 227.97 | 0.703 | 3.46 | -- | 0.697 | 1.4 | -- | -- | 0.288 | 12 | 23.62 | 259 | -- | -- |
| 328.33 | 0.847 | 3.45 | -0.252 | -- | -- | -- | -- | 0.393 | -- | -- | -- | -- | -- |
| 262.75 | 0.758 | 3.44 | -- | 1.06 | -- | -- | -- | 0.442 | 14.3 | -- | -- | -- | -- |
| 248.2 | 0.734 | 3.46 | -- | -- | 1.79 | -- | -- | 0.336 | -- | 25.1 | 110 | -- | -- |
| 330.01 | 0.848 | 3.44 | -- | -- | -- | -- | -- | 0.421 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 210.46 | temperature | 25 | 720 | > th | dose dependent | rect. | 7 | 2 |
| 5 | 211.64 | temperature | 25 | 270 | > th | dose dependent | rect. | 6 | 13 |
| 15 | 211.89 | temperature | 25 | 270 | > th | dose dependent | rect. | 23 | 20 |
| 62 | 213.83 | temperature | 25 | 270 | > th | dose dependent | sin | 23 | NA |
| 75 | 214.24 | temperature | 25 | 720 | > th | dose dependent | rect. | 21 | 13 |
| 92 | 214.84 | temperature | 25 | 270 | > th | dose dependent | rect. | 11 | 23 |
| 147 | 215.52 | temperature | 25 | 270 | > th | dose dependent | no | NA | NA |
| 182 | 216.45 | temperature | 25 | 720 | > th | dose dependent | rect. | 22 | 11 |
| 231 | 216.94 | temperature | 30 | 90 | > th | dose independent | rect. | 11 | 23 |
| 232 | 216.95 | temperature | 30 | 90 | < th | dose independent | sin | 19 | NA |
| 251 | 217.29 | temperature | 25 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 264 | 217.52 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 4 |
| 271 | 217.58 | temperature | 30 | 90 | > th | dose independent | sin | 19 | NA |
| 282 | 217.68 | temperature | 25 | 270 | > th | dose dependent | rect. | 14 | 23 |
| 303 | 217.93 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 308 | 217.98 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 11 |
| 316 | 218.06 | temperature | 25 | 1440 | > th | dose dependent | rect. | 14 | 20 |
| 318 | 218.07 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 13 |
| 332 | 218.18 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 6 |
| 335 | 218.20 | temperature | 25 | 720 | > th | dose dependent | sin | 8 | NA |
| 393 | 218.48 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 3 |
| 418 | 218.58 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 432 | 218.61 | temperature | 25 | 1440 | > th | dose dependent | sin | 22 | NA |
| 492 | 218.76 | humidity | 90 | 270 | < th | dose dependent | rect. | 7 | 11 |
| 530 | 218.91 | temperature | 30 | 90 | < th | dose independent | rect. | 17 | 23 |
| 539 | 218.93 | temperature | 30 | 90 | > th | dose independent | rect. | 11 | 8 |
| 554 | 218.94 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 578 | 219.00 | temperature | 30 | 90 | < th | dose independent | no | NA | NA |
| 610 | 219.09 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 634 | 219.21 | temperature | 30 | 270 | < th | dose independent | rect. | 2 | 23 |
| 649 | 219.30 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 655 | 219.33 | temperature | 30 | 90 | > th | dose independent | rect. | 9 | 10 |
| 683 | 219.42 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 705 | 219.49 | wind | 3 | 43200 | > th | dose dependent | rect. | 20 | 2 |
| 717 | 219.53 | temperature | 30 | 30 | < th | dose independent | rect. | 9 | 23 |
| 747 | 219.67 | temperature | 30 | 90 | > th | dose independent | no | NA | NA |
| 748 | 219.67 | temperature | 30 | 270 | < th | dose independent | sin | 23 | NA |
| 899 | 219.97 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 900 | 219.97 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 22 |
| 914 | 220.01 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 927 | 220.06 | temperature | 30 | 270 | > th | dose independent | rect. | 18 | 23 |
| 939 | 220.10 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 3 |
| 946 | 220.11 | temperature | 30 | 1440 | > th | dose independent | rect. | 10 | 2 |
| 961 | 220.16 | wind | 9 | 43200 | > th | dose dependent | rect. | 12 | 18 |