Os01g0384300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os01g0384300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 53.8 | 0.345 | 9.83 | 1.36 | 1.31 | -0.49 | -0.321 | 1.57 | 0.163 | 3.09 | 22.35 | 941 | -- | -- |
| 62.2 | 0.367 | 9.84 | 1.17 | 1.35 | -0.687 | -0.0584 | -- | 0.171 | 3.24 | 21.4 | 2584 | -- | -- |
| 54.12 | 0.343 | 9.83 | 1.34 | 1.31 | -0.489 | -- | 1.51 | 0.161 | 3.07 | 22.39 | 919 | -- | -- |
| 59.57 | 0.359 | 9.88 | 1.16 | 1.29 | -0.853 | -- | -- | 0.0684 | 3.28 | 18.9 | 3815 | -- | -- |
| 136.98 | 0.548 | 9.85 | 1.09 | -- | -0.582 | -- | 0.587 | 0.123 | -- | 22.39 | 919 | -- | -- |
| 71.23 | 0.396 | 9.91 | 0.681 | 1.27 | -- | -0.0955 | -- | -0.13 | 3.33 | -- | -- | -- | -- |
| 71.26 | 0.395 | 9.91 | 0.683 | 1.27 | -- | -- | -- | -0.129 | 3.32 | -- | -- | -- | -- |
| 138.52 | 0.551 | 9.88 | 0.929 | -- | -0.644 | -- | -- | 0.0619 | -- | 21.48 | 1770 | -- | -- |
| 78.43 | 0.412 | 9.91 | -- | 1.31 | -0.325 | -- | -- | -0.106 | 3.15 | 22.4 | 869 | -- | -- |
| 162.05 | 0.595 | 9.91 | 0.736 | -- | -- | -- | -- | -0.0957 | -- | -- | -- | -- | -- |
| 83.55 | 0.428 | 9.93 | -- | 1.28 | -- | -- | -- | -0.205 | 3.32 | -- | -- | -- | -- |
| 159.3 | 0.588 | 9.91 | -- | -- | -0.556 | -- | -- | -0.0752 | -- | 20.8 | 113 | -- | -- |
| 176.36 | 0.62 | 9.93 | -- | -- | -- | -- | -- | -0.177 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 47.54 | temperature | 20 | 270 | > th | dose dependent | rect. | 18 | 21 |
| 30 | 50.97 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 22 |
| 40 | 51.56 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 20 |
| 46 | 51.71 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 73 | 52.36 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 12 |
| 76 | 52.37 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 17 |
| 80 | 52.41 | humidity | 90 | 14400 | > th | dose dependent | sin | 10 | NA |
| 90 | 52.45 | humidity | 90 | 14400 | > th | dose dependent | rect. | 17 | 14 |
| 92 | 52.46 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 2 |
| 107 | 52.52 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 6 |
| 112 | 52.55 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 4 |
| 133 | 52.64 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 150 | 52.71 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 152 | 52.73 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 6 |
| 164 | 52.78 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 184 | 52.85 | humidity | 90 | 14400 | > th | dose independent | rect. | 20 | 8 |
| 191 | 52.87 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 3 |
| 196 | 52.92 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 4 |
| 276 | 53.24 | temperature | 20 | 270 | > th | dose dependent | sin | 6 | NA |
| 295 | 53.32 | humidity | 90 | 14400 | > th | dose independent | sin | 10 | NA |
| 383 | 53.70 | humidity | 90 | 14400 | > th | dose independent | rect. | 22 | 3 |
| 398 | 53.75 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 23 |
| 411 | 53.82 | humidity | 90 | 43200 | > th | dose dependent | rect. | 11 | 4 |
| 412 | 53.82 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 13 |
| 430 | 53.88 | radiation | 30 | 43200 | < th | dose independent | rect. | 17 | 14 |
| 431 | 53.88 | temperature | 20 | 270 | > th | dose dependent | rect. | 5 | 9 |
| 459 | 53.98 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 3 |
| 464 | 53.99 | humidity | 90 | 43200 | > th | dose independent | rect. | 11 | 4 |
| 468 | 53.99 | radiation | 1 | 14400 | < th | dose dependent | rect. | 23 | 8 |
| 502 | 54.07 | humidity | 90 | 14400 | < th | dose independent | rect. | 19 | 9 |
| 519 | 54.12 | radiation | 30 | 43200 | < th | dose independent | rect. | 4 | 3 |
| 532 | 54.16 | wind | 9 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 581 | 54.23 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 625 | 54.32 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 23 |
| 627 | 54.33 | radiation | 1 | 14400 | < th | dose dependent | sin | 11 | NA |
| 628 | 54.33 | radiation | 1 | 14400 | < th | dose dependent | rect. | 17 | 3 |
| 662 | 54.39 | humidity | 90 | 43200 | < th | dose independent | rect. | 11 | 3 |
| 664 | 54.39 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 18 |
| 665 | 54.39 | humidity | 90 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 670 | 54.41 | radiation | 1 | 14400 | > th | dose independent | rect. | 17 | 15 |
| 679 | 54.43 | temperature | 25 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 680 | 54.43 | radiation | 30 | 43200 | < th | dose independent | rect. | 23 | 8 |
| 720 | 54.50 | temperature | 20 | 720 | < th | dose independent | rect. | 22 | 18 |
| 734 | 54.52 | wind | 9 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 744 | 54.54 | radiation | 30 | 43200 | < th | dose independent | rect. | 21 | 10 |
| 751 | 54.55 | radiation | 1 | 43200 | < th | dose independent | rect. | 6 | 10 |
| 755 | 54.56 | humidity | 90 | 14400 | < th | dose independent | rect. | 22 | 3 |
| 757 | 54.56 | radiation | 1 | 43200 | > th | dose independent | rect. | 6 | 10 |
| 761 | 54.57 | radiation | 1 | 43200 | < th | dose independent | rect. | 6 | 6 |
| 766 | 54.58 | temperature | 25 | 4320 | > th | dose independent | rect. | 11 | 2 |
| 768 | 54.58 | radiation | 1 | 43200 | > th | dose independent | rect. | 6 | 6 |
| 771 | 54.58 | radiation | 20 | 43200 | < th | dose dependent | rect. | 3 | 2 |
| 799 | 54.62 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 801 | 54.62 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 19 |
| 830 | 54.65 | wind | 9 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 854 | 54.68 | radiation | 1 | 43200 | < th | dose independent | rect. | 10 | 6 |
| 859 | 54.69 | temperature | 30 | 270 | < th | dose dependent | sin | 5 | NA |
| 869 | 54.70 | radiation | 1 | 43200 | > th | dose independent | rect. | 10 | 6 |
| 883 | 54.72 | radiation | 1 | 43200 | > th | dose independent | rect. | 14 | 2 |
| 884 | 54.72 | radiation | 1 | 43200 | < th | dose independent | rect. | 14 | 2 |
| 902 | 54.74 | radiation | 1 | 43200 | < th | dose dependent | rect. | 14 | 2 |
| 948 | 54.80 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 10 |
| 970 | 54.84 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |