Os01g0382900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0382900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 50.87 | 0.335 | 9.1 | 1.11 | 0.353 | 0.277 | 0.216 | -1.3 | 0.0229 | 0.163 | 23.91 | 554 | -- | -- |
| 54.74 | 0.347 | 9.15 | 0.637 | 0.241 | 0.203 | 0.31 | -- | -0.121 | 0.11 | 23.91 | 554 | -- | -- |
| 51.04 | 0.333 | 9.1 | 1.11 | 0.357 | 0.276 | -- | -1.34 | 0.0232 | 0.317 | 23.97 | 577 | -- | -- |
| 55.01 | 0.348 | 9.15 | 0.622 | 0.247 | 0.201 | -- | -- | -0.125 | 0.924 | 23.91 | 554 | -- | -- |
| 56.76 | 0.353 | 9.13 | 0.802 | -- | 0.298 | -- | -0.394 | -0.0482 | -- | 23.6 | 240 | -- | -- |
| 57.72 | 0.356 | 9.17 | 0.547 | 0.314 | -- | 0.267 | -- | -0.214 | 0.626 | -- | -- | -- | -- |
| 57.95 | 0.356 | 9.17 | 0.536 | 0.317 | -- | -- | -- | -0.216 | 1.08 | -- | -- | -- | -- |
| 57.65 | 0.355 | 9.14 | 0.672 | -- | 0.29 | -- | -- | -0.0874 | -- | 23.6 | 240 | -- | -- |
| 64.33 | 0.376 | 9.18 | -- | 0.285 | 0.125 | -- | -- | -0.23 | 1.13 | 23.51 | 486 | -- | -- |
| 64.18 | 0.374 | 9.17 | 0.548 | -- | -- | -- | -- | -0.21 | -- | -- | -- | -- | -- |
| 65.52 | 0.379 | 9.19 | -- | 0.326 | -- | -- | -- | -0.276 | 1.15 | -- | -- | -- | -- |
| 67.78 | 0.383 | 9.15 | -- | -- | 0.229 | -- | -- | -0.152 | -- | 24.6 | 37 | -- | -- |
| 72.1 | 0.396 | 9.18 | -- | -- | -- | -- | -- | -0.27 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 51.25 | radiation | 1 | 720 | < th | dose dependent | rect. | 21 | 22 |
| 3 | 51.47 | temperature | 25 | 720 | < th | dose independent | rect. | 19 | 4 |
| 4 | 51.47 | temperature | 25 | 90 | < th | dose independent | rect. | 21 | 21 |
| 5 | 51.50 | radiation | 1 | 720 | < th | dose independent | rect. | 13 | 6 |
| 6 | 51.51 | radiation | 1 | 720 | > th | dose independent | sin | 18 | NA |
| 7 | 51.51 | radiation | 1 | 720 | > th | dose independent | rect. | 10 | 9 |
| 18 | 51.52 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 17 |
| 22 | 51.54 | temperature | 25 | 720 | < th | dose independent | rect. | 16 | 9 |
| 37 | 51.56 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 22 |
| 38 | 51.57 | temperature | 25 | 720 | < th | dose independent | sin | 15 | NA |
| 42 | 51.59 | temperature | 25 | 720 | < th | dose independent | rect. | 17 | 6 |
| 68 | 51.65 | temperature | 25 | 30 | < th | dose independent | sin | 9 | NA |
| 78 | 51.69 | radiation | 1 | 720 | < th | dose dependent | sin | 22 | NA |
| 88 | 51.77 | radiation | 1 | 720 | < th | dose independent | sin | 22 | NA |
| 106 | 51.81 | temperature | 25 | 1440 | > th | dose dependent | sin | 14 | NA |
| 119 | 51.86 | radiation | 1 | 720 | < th | dose dependent | rect. | 12 | 7 |
| 131 | 51.88 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 12 |
| 148 | 51.92 | temperature | 25 | 720 | < th | dose independent | rect. | 11 | 17 |
| 167 | 51.97 | radiation | 1 | 720 | < th | dose independent | rect. | 21 | 22 |
| 184 | 52.00 | temperature | 25 | 1440 | > th | dose dependent | rect. | 20 | 2 |
| 197 | 52.02 | temperature | 25 | 90 | < th | dose independent | rect. | 23 | 19 |
| 229 | 52.07 | wind | 1 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 242 | 52.10 | radiation | 1 | 720 | > th | dose independent | rect. | 13 | 6 |
| 310 | 52.19 | wind | 1 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 324 | 52.21 | radiation | 1 | 720 | < th | dose dependent | rect. | 11 | 20 |
| 331 | 52.22 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 23 |
| 364 | 52.26 | radiation | 1 | 720 | < th | dose dependent | rect. | 11 | 12 |
| 406 | 52.31 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 17 |
| 417 | 52.32 | radiation | 1 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 422 | 52.33 | humidity | 50 | 10 | > th | dose dependent | rect. | 14 | 16 |
| 429 | 52.34 | radiation | 1 | 720 | < th | dose dependent | rect. | 7 | 23 |
| 437 | 52.36 | wind | 3 | 43200 | > th | dose dependent | rect. | 16 | 1 |
| 446 | 52.37 | humidity | 90 | 90 | > th | dose independent | rect. | 21 | 9 |
| 464 | 52.38 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 16 |
| 478 | 52.40 | radiation | 1 | 720 | < th | dose dependent | no | NA | NA |
| 480 | 52.41 | radiation | 10 | 1440 | < th | dose independent | rect. | 20 | 9 |
| 492 | 52.42 | humidity | 90 | 90 | > th | dose dependent | rect. | 20 | 11 |
| 505 | 52.43 | radiation | 1 | 90 | < th | dose dependent | rect. | 20 | 23 |
| 508 | 52.44 | temperature | 30 | 720 | < th | dose dependent | sin | 13 | NA |
| 520 | 52.46 | humidity | 90 | 90 | > th | dose dependent | sin | 12 | NA |
| 562 | 52.51 | radiation | 1 | 1440 | > th | dose independent | rect. | 4 | 1 |
| 575 | 52.51 | radiation | 1 | 90 | < th | dose independent | rect. | 20 | 23 |
| 577 | 52.51 | radiation | 1 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 594 | 52.52 | temperature | 25 | 30 | < th | dose independent | rect. | 3 | 23 |
| 616 | 52.54 | humidity | 90 | 30 | > th | dose dependent | rect. | 21 | 13 |
| 619 | 52.54 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 18 |
| 620 | 52.54 | radiation | 1 | 720 | < th | dose dependent | rect. | 1 | 18 |
| 646 | 52.56 | radiation | 1 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 662 | 52.57 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 2 |
| 668 | 52.57 | radiation | 1 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 672 | 52.58 | atmosphere | 1010 | 90 | < th | dose dependent | rect. | 23 | 7 |
| 692 | 52.60 | temperature | 25 | 720 | > th | dose independent | rect. | 10 | 21 |
| 693 | 52.60 | temperature | 25 | 270 | < th | dose dependent | rect. | 22 | 11 |
| 718 | 52.62 | temperature | 25 | 90 | < th | dose independent | rect. | 7 | 23 |
| 729 | 52.64 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 730 | 52.64 | humidity | 90 | 90 | > th | dose independent | rect. | 23 | 8 |
| 731 | 52.64 | temperature | 25 | 1440 | > th | dose independent | rect. | 16 | 9 |
| 742 | 52.65 | temperature | 25 | 270 | < th | dose independent | rect. | 21 | 7 |
| 774 | 52.66 | atmosphere | 1010 | 90 | < th | dose dependent | rect. | 21 | 9 |
| 775 | 52.66 | radiation | 40 | 4320 | < th | dose dependent | rect. | 20 | 9 |
| 778 | 52.67 | wind | 5 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 791 | 52.67 | humidity | 90 | 10 | > th | dose dependent | rect. | 5 | 23 |
| 798 | 52.69 | wind | 5 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 812 | 52.70 | humidity | 50 | 720 | > th | dose independent | rect. | 11 | 8 |
| 850 | 52.72 | radiation | 1 | 720 | < th | dose independent | rect. | 11 | 19 |
| 853 | 52.72 | radiation | 1 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 861 | 52.73 | humidity | 90 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 903 | 52.75 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 908 | 52.75 | wind | 3 | 43200 | > th | dose dependent | rect. | 13 | 5 |
| 922 | 52.76 | temperature | 25 | 1440 | > th | dose independent | sin | 14 | NA |
| 940 | 52.77 | temperature | 25 | 720 | > th | dose independent | rect. | 10 | 18 |
| 989 | 52.79 | radiation | 10 | 90 | < th | dose independent | rect. | 6 | 21 |