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Os01g0382400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Pathogenesis-related protein PRB1-2 precursor.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.53 (0.0707) R2 : 0.741
β1 : -0.509 (0.357) R2dD : 0.0014 R2D : 0.0457
β2 : -- (--) R2dC : -- R2C : --
β3 : -5.89 (0.272) R2dE : 0.267 R2E : 0.341
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -20.8 (1.39) R2dD*E : 0.229 R2D*E : 0.317
γ1 : 1.95 (0.148) R2dN8 : 0.133 R2N8 : 0.137
σ : 1.29
deviance : 772.4
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C
peak time of C : --
E
wheather : radiation
threshold : 0.9067
memory length : 1443
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 17.9
open length of G : 11.3

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
792.74 1.32 8.53 -0.568 0.195 -6.34 0.735 -21.9 2.02 16.4 1.02 1442 18 11.1
1233.84 1.64 8.23 -1.39 0.353 -5.99 0.4 -- 2.13 16.2 1.914 1438 17.5 11.9
781.93 1.3 8.53 -0.409 0.189 -6.08 -- -22.1 2.06 16.7 1.04 1442 17.9 11.2
1026.73 1.49 8.3 -3.78 0.0412 -4.72 -- -- 1.94 2.33 2.41 1439 17.7 11.8
772.4 1.29 8.53 -0.509 -- -5.89 -- -20.8 1.95 -- 0.9067 1443 17.9 11.3
1813.25 2 8.32 -5.22 0.246 -- -0.0122 -- 1.79 10.3 -- -- -- --
1813.25 1.99 8.32 -5.22 0.246 -- -- -- 1.79 10.3 -- -- -- --
1005.52 1.48 8.31 -4.17 -- -4.83 -- -- 1.97 -- 2.41 1440 17.6 11.9
1452.01 1.77 8.2 -- 0.0495 -4.97 -- -- 2.5 2.21 3.914 1441 17.7 11.8
1816.92 1.99 8.33 -5.22 -- -- -- -- 1.79 -- -- -- -- --
2531.59 2.35 8.19 -- 0.291 -- -- -- 2.37 11.6 -- -- -- --
1423.63 1.76 8.17 -- -- -5.85 -- -- 2.49 -- 3.627 1441 17.6 11.8
2536.92 2.35 8.19 -- -- -- -- -- 2.37 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 726.32 radiation 20.0 14400 < th dose dependent rect. 18 1
5 727.24 radiation 10.0 14400 < th dose dependent rect. 18 5
23 733.91 radiation 40.0 14400 < th dose dependent rect. 18 9
25 734.11 radiation 40.0 14400 < th dose dependent rect. 18 11
56 784.34 radiation 1.0 14400 > th dose independent rect. 18 11
57 784.53 radiation 1.0 14400 < th dose independent rect. 18 11
58 788.16 radiation 1.0 14400 < th dose independent rect. 18 9
60 788.29 radiation 1.0 14400 < th dose independent rect. 18 5
62 788.39 radiation 1.0 14400 < th dose independent rect. 18 1
68 790.89 radiation 1.0 14400 > th dose independent rect. 18 1
78 791.04 radiation 30.0 14400 > th dose independent rect. 16 16
79 791.41 radiation 10.0 14400 > th dose dependent rect. 17 1
104 807.46 radiation 30.0 14400 > th dose independent rect. 7 1
121 812.12 radiation 10.0 14400 < th dose independent rect. 16 14
190 821.11 radiation 1.0 1440 < th dose dependent rect. 18 11
280 833.90 radiation 1.0 1440 < th dose dependent rect. 18 1
281 833.97 radiation 1.0 14400 < th dose dependent sin 15 NA
285 834.62 radiation 1.0 1440 < th dose dependent rect. 18 9
290 835.71 wind 9.0 43200 > th dose dependent rect. 19 11
293 836.03 radiation 1.0 1440 < th dose dependent rect. 18 5
311 839.83 radiation 1.0 43200 < th dose dependent rect. 4 1
314 840.21 radiation 1.0 43200 < th dose dependent rect. 2 3
332 844.12 radiation 1.0 14400 < th dose independent sin 14 NA
353 844.71 precipitation 0.1 43200 < th dose independent rect. 20 1
354 844.71 precipitation 0.1 43200 < th dose dependent rect. 20 1
370 845.68 precipitation 0.1 43200 > th dose independent rect. 20 1
397 847.87 radiation 1.0 14400 > th dose independent sin 14 NA
416 848.45 temperature 20.0 1440 > th dose dependent rect. 6 1
480 852.65 temperature 10.0 4320 > th dose dependent rect. 18 1
485 853.07 precipitation 0.1 43200 > th dose dependent rect. 17 5
533 856.52 precipitation 0.1 43200 < th dose independent rect. 17 2
534 856.52 precipitation 0.1 43200 < th dose dependent rect. 17 2
540 856.82 precipitation 0.1 43200 > th dose independent rect. 17 2
588 860.23 radiation 1.0 14400 < th dose independent rect. 9 20
633 862.04 precipitation 0.1 43200 > th dose dependent rect. 20 1
640 862.20 radiation 1.0 14400 < th dose independent rect. 9 10
641 862.20 radiation 1.0 14400 < th dose independent rect. 9 14
643 862.22 temperature 15.0 4320 > th dose dependent rect. 16 7
675 863.10 radiation 30.0 14400 < th dose independent rect. 15 17
704 863.52 temperature 30.0 4320 < th dose dependent rect. 18 1
750 864.90 radiation 1.0 14400 > th dose independent rect. 8 21
812 866.64 radiation 1.0 14400 > th dose independent rect. 9 10
844 867.49 radiation 1.0 14400 < th dose dependent rect. 18 23
858 867.71 radiation 30.0 14400 > th dose dependent rect. 15 17
859 867.73 temperature 20.0 1440 > th dose dependent rect. 16 22
977 870.87 radiation 1.0 14400 < th dose dependent rect. 4 15
979 870.88 radiation 1.0 14400 < th dose dependent rect. 2 17
982 870.90 temperature 30.0 4320 < th dose dependent rect. 18 5
983 870.92 temperature 20.0 1440 > th dose dependent rect. 2 21
985 870.95 radiation 1.0 14400 < th dose dependent rect. 4 19
987 870.97 radiation 1.0 14400 < th dose dependent rect. 2 21