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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0382200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Transferase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.88 (0.0264) R2 : 0.0011
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0393 (0.0556) R2dN8 : 0.00142 R2N8 : 0.0011
σ : 0.497
deviance : 113.46
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
101.76 0.47 -0.779 -7.7 0.0477 -703 -0.288 -1490 0.0599 13.9 15 90 -- --
110.67 0.494 2.88 -0.0916 0.0857 0.744 -0.547 -- 0.0355 13.1 15 90 -- --
102.06 0.471 -0.788 -7.73 0.0457 -703 -- -1490 0.0573 13.4 15.02 86 -- --
105.19 0.478 2.88 -0.0366 0.0885 1.2 -- -- 0.0426 14.1 18.21 60 -- --
102.18 0.471 -0.801 -7.76 -- -703 -- -1490 0.0569 -- 15.02 87 -- --
111.71 0.495 2.89 -0.124 0.0736 -- -0.463 -- 0.0276 13.3 -- -- -- --
112.58 0.497 2.89 -0.14 0.0741 -- -- -- 0.0249 12.8 -- -- -- --
104.88 0.477 2.88 -0.0149 -- 1.45 -- -- 0.0568 -- 17.37 156 -- --
104.61 0.476 2.88 -- 0.0764 1.41 -- -- 0.0675 13.8 18.2 154 -- --
112.93 0.497 2.89 -0.143 -- -- -- -- 0.0235 -- -- -- -- --
113.1 0.497 2.88 -- 0.0763 -- -- -- 0.0405 12.9 -- -- -- --
104.89 0.477 2.88 -- -- 1.46 -- -- 0.0586 -- 17.39 156 -- --
113.46 0.497 2.88 -- -- -- -- -- 0.0393 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 98.75 temperature 30.0 30 < th dose dependent rect. 12 1
2 99.58 temperature 25.0 90 < th dose dependent rect. 10 1
19 100.49 temperature 15.0 4320 > th dose independent rect. 13 1
20 100.50 temperature 15.0 4320 > th dose independent rect. 10 5
21 100.50 temperature 15.0 720 > th dose independent rect. 5 10
28 100.72 precipitation 0.1 14400 < th dose independent rect. 23 1
29 100.72 precipitation 0.1 14400 < th dose dependent rect. 23 1
35 100.81 atmosphere 1015.0 1440 < th dose independent rect. 24 1
40 100.85 precipitation 0.1 720 > th dose dependent rect. 6 8
43 100.87 temperature 20.0 90 < th dose dependent rect. 10 13
45 100.90 precipitation 0.1 720 > th dose independent rect. 6 8
46 100.90 temperature 15.0 720 > th dose independent rect. 3 13
51 100.92 temperature 30.0 30 < th dose dependent rect. 20 17
53 100.95 temperature 15.0 1440 > th dose independent rect. 24 7
62 101.02 atmosphere 1015.0 1440 < th dose independent rect. 24 7
66 101.04 precipitation 0.1 14400 > th dose independent rect. 23 1
67 101.04 precipitation 0.1 14400 > th dose dependent rect. 23 1
78 101.11 temperature 15.0 1440 > th dose independent rect. 24 14
88 101.16 precipitation 0.1 720 > th dose independent rect. 8 5
89 101.16 precipitation 0.1 720 > th dose dependent rect. 8 5
107 101.27 humidity 90.0 720 > th dose independent rect. 9 5
112 101.30 temperature 15.0 4320 > th dose independent rect. 21 1
126 101.34 temperature 20.0 720 < th dose independent rect. 10 3
134 101.36 radiation 1.0 720 < th dose independent rect. 8 5
137 101.36 radiation 1.0 720 < th dose dependent rect. 8 5
144 101.38 humidity 90.0 720 > th dose dependent rect. 9 5
146 101.39 humidity 90.0 720 > th dose independent rect. 11 2
157 101.46 humidity 50.0 43200 > th dose independent rect. 24 6
159 101.46 temperature 15.0 4320 < th dose independent rect. 5 13
162 101.47 temperature 15.0 4320 > th dose independent rect. 10 12
167 101.48 temperature 15.0 4320 < th dose independent rect. 17 1
174 101.49 temperature 15.0 4320 < th dose independent rect. 14 1
175 101.49 temperature 15.0 4320 < th dose independent rect. 12 3
178 101.49 temperature 15.0 4320 < th dose independent rect. 6 10
182 101.50 temperature 15.0 4320 < th dose independent rect. 13 6
183 101.50 temperature 15.0 4320 < th dose independent rect. 9 9
194 101.51 temperature 15.0 4320 < th dose independent rect. 10 6
205 101.52 temperature 15.0 4320 < th dose independent rect. 16 3
215 101.52 temperature 15.0 4320 > th dose independent rect. 5 11
230 101.53 atmosphere 1005.0 90 > th dose dependent rect. 11 2
252 101.56 precipitation 0.1 1440 > th dose independent rect. 10 1
267 101.56 precipitation 0.1 1440 > th dose dependent rect. 10 1
283 101.59 humidity 60.0 43200 < th dose independent rect. 23 1
299 101.59 humidity 60.0 43200 < th dose dependent rect. 23 1
310 101.60 temperature 20.0 270 < th dose dependent sin 22 NA
312 101.61 temperature 15.0 4320 < th dose independent sin 22 NA
321 101.61 atmosphere 1015.0 720 < th dose independent rect. 3 16
322 101.61 temperature 15.0 4320 < th dose dependent rect. 22 1
323 101.61 temperature 15.0 4320 < th dose dependent rect. 6 7
326 101.62 temperature 15.0 1440 < th dose independent rect. 24 2
333 101.62 temperature 15.0 1440 < th dose dependent rect. 24 2
342 101.63 humidity 90.0 720 > th dose dependent rect. 11 2
343 101.63 atmosphere 1015.0 4320 > th dose dependent rect. 14 6
344 101.63 temperature 15.0 4320 < th dose dependent rect. 5 10
348 101.64 temperature 15.0 720 > th dose independent rect. 3 7
361 101.65 temperature 15.0 4320 < th dose dependent rect. 3 17
362 101.65 temperature 15.0 4320 < th dose dependent rect. 3 20
364 101.66 temperature 15.0 720 < th dose independent rect. 6 18
368 101.66 temperature 15.0 1440 < th dose dependent rect. 24 6
373 101.66 temperature 15.0 4320 < th dose dependent rect. 4 15
378 101.67 temperature 15.0 1440 > th dose independent rect. 24 11
388 101.67 temperature 15.0 4320 < th dose dependent rect. 4 13
398 101.68 temperature 15.0 4320 < th dose dependent sin 1 NA
410 101.69 temperature 15.0 1440 < th dose independent rect. 24 6
422 101.70 temperature 15.0 4320 > th dose independent sin 23 NA
433 101.70 temperature 15.0 720 < th dose independent rect. 9 15
436 101.70 wind 7.0 720 > th dose dependent rect. 9 1
443 101.70 temperature 15.0 720 < th dose dependent rect. 24 19
472 101.72 temperature 15.0 720 < th dose independent rect. 24 21
477 101.72 temperature 15.0 4320 < th dose dependent rect. 6 5
484 101.72 temperature 15.0 720 < th dose dependent rect. 5 19
486 101.73 temperature 15.0 720 < th dose independent sin 10 NA
489 101.73 temperature 15.0 720 < th dose independent rect. 22 6
492 101.73 temperature 15.0 4320 > th dose independent rect. 12 10
493 101.73 temperature 15.0 1440 > th dose independent rect. 21 10
497 101.73 temperature 15.0 720 < th dose independent rect. 20 11
500 101.73 temperature 15.0 720 < th dose independent rect. 19 16
501 101.73 temperature 15.0 1440 > th dose independent rect. 21 17
502 101.73 temperature 15.0 720 < th dose independent rect. 19 18
506 101.73 temperature 15.0 720 < th dose independent rect. 21 21
512 101.73 wind 7.0 720 > th dose dependent rect. 1 9
518 101.74 temperature 15.0 4320 < th dose independent rect. 6 1
519 101.74 temperature 15.0 1440 < th dose independent rect. 3 2
529 101.74 temperature 15.0 720 < th dose independent rect. 21 8
541 101.74 temperature 15.0 720 < th dose dependent sin 7 NA
544 101.74 wind 7.0 720 > th dose dependent rect. 4 6
559 101.75 temperature 15.0 90 > th dose independent sin 23 NA
560 101.75 temperature 15.0 720 < th dose independent sin 1 NA
570 101.75 temperature 15.0 720 < th dose independent rect. 2 18
581 101.75 temperature 15.0 720 < th dose dependent sin 1 NA
592 101.76 temperature 15.0 90 > th dose independent sin 21 NA
595 101.76 temperature 15.0 270 > th dose independent sin 5 NA
596 101.76 temperature 15.0 90 > th dose independent no NA NA
598 101.76 temperature 15.0 90 < th dose independent sin 7 NA
647 101.76 temperature 15.0 90 < th dose independent no NA NA
653 101.76 temperature 15.0 1440 < th dose independent rect. 9 1
657 101.76 atmosphere 1015.0 1440 > th dose independent rect. 1 1
796 101.76 temperature 15.0 270 < th dose independent rect. 24 10