Os01g0382000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Pathogenesis-related protein PRB1-2 precursor.
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Os01g0382000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Pathogenesis-related protein PRB1-2 precursor.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1055 | 1.53 | 8.19 | 0.312 | 0.223 | -3.38 | -1.16 | 2.77 | 0.678 | 0.472 | 20.86 | 1449 | 16.9 | 1.02 |
| 1064.4 | 1.52 | 8.21 | -0.369 | 0.216 | -3.19 | -1.01 | -- | 0.68 | 23.9 | 20.85 | 1446 | 16.9 | 1.1 |
| 1057.89 | 1.51 | 8.2 | 0.346 | 0.297 | -3.43 | -- | 2.79 | 0.677 | 22.1 | 20.81 | 1449 | 16.9 | 1.05 |
| 1064.94 | 1.52 | 8.21 | -0.344 | 0.323 | -3.19 | -- | -- | 0.609 | 22.2 | 20.69 | 1447 | 16.9 | 1.12 |
| 1063.46 | 1.52 | 8.2 | 0.303 | -- | -3.53 | -- | 2.74 | 0.661 | -- | 20.96 | 1453 | 16.9 | 1.05 |
| 1397.32 | 1.75 | 8.38 | -1.31 | 0.145 | -- | 1.8 | -- | 0.0399 | 15.9 | -- | -- | -- | -- |
| 1403.65 | 1.75 | 8.38 | -1.29 | 0.29 | -- | -- | -- | 0.0507 | 19.4 | -- | -- | -- | -- |
| 1070 | 1.52 | 8.23 | -0.339 | -- | -3.18 | -- | -- | 0.603 | -- | 20.77 | 1449 | 16.8 | 1.13 |
| 1067.26 | 1.52 | 8.21 | -- | 0.303 | -3.26 | -- | -- | 0.645 | 21.5 | 20.71 | 1448 | 16.9 | 1.12 |
| 1408.13 | 1.75 | 8.37 | -1.3 | -- | -- | -- | -- | 0.046 | -- | -- | -- | -- | -- |
| 1447.59 | 1.78 | 8.35 | -- | 0.303 | -- | -- | -- | 0.195 | 19.1 | -- | -- | -- | -- |
| 1072.39 | 1.53 | 8.24 | -- | -- | -3.26 | -- | -- | 0.592 | -- | 20.74 | 1448 | 16.8 | 1.2 |
| 1452.43 | 1.78 | 8.34 | -- | -- | -- | -- | -- | 0.19 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 1059.64 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 3 | 1067.36 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 16 | 13 |
| 4 | 1068.09 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 16 | 9 |
| 9 | 1070.44 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 20 | 1074.76 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 21 | 1074.93 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 14 | 2 |
| 24 | 1075.33 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 34 | 1080.42 | wind | 5.0 | 43200 | > th | dose independent | rect. | 11 | 5 |
| 36 | 1080.93 | wind | 5.0 | 43200 | > th | dose independent | rect. | 10 | 7 |
| 43 | 1083.15 | wind | 5.0 | 43200 | > th | dose independent | rect. | 13 | 2 |
| 44 | 1083.23 | wind | 5.0 | 43200 | < th | dose independent | rect. | 10 | 7 |
| 56 | 1084.56 | wind | 5.0 | 43200 | < th | dose independent | rect. | 11 | 5 |
| 62 | 1086.08 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 11 | 5 |
| 84 | 1089.62 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 16 | 18 |
| 89 | 1090.16 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 6 |
| 91 | 1090.17 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 18 | 11 |
| 102 | 1090.88 | wind | 5.0 | 43200 | < th | dose independent | rect. | 13 | 2 |
| 124 | 1092.28 | wind | 5.0 | 43200 | > th | dose independent | rect. | 10 | 11 |
| 127 | 1092.31 | temperature | 20.0 | 1440 | > th | dose dependent | sin | 16 | NA |
| 143 | 1093.32 | wind | 5.0 | 43200 | > th | dose independent | sin | 21 | NA |
| 147 | 1093.40 | radiation | 40.0 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 157 | 1094.01 | wind | 5.0 | 43200 | < th | dose independent | rect. | 9 | 12 |
| 172 | 1094.69 | wind | 5.0 | 43200 | < th | dose independent | sin | 21 | NA |
| 194 | 1095.34 | wind | 5.0 | 43200 | > th | dose independent | rect. | 11 | 16 |
| 208 | 1095.74 | wind | 5.0 | 43200 | < th | dose independent | rect. | 11 | 19 |
| 220 | 1096.02 | wind | 5.0 | 43200 | < th | dose independent | rect. | 11 | 17 |
| 226 | 1096.32 | wind | 5.0 | 43200 | < th | dose independent | rect. | 10 | 15 |
| 237 | 1096.61 | wind | 5.0 | 43200 | > th | dose independent | rect. | 11 | 19 |
| 241 | 1096.71 | wind | 5.0 | 43200 | > th | dose independent | rect. | 13 | 10 |
| 247 | 1096.92 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 289 | 1097.94 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 9 | 12 |
| 305 | 1098.23 | wind | 5.0 | 43200 | > th | dose dependent | sin | 22 | NA |
| 317 | 1098.53 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 5 | 14 |
| 379 | 1099.83 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 13 | 8 |
| 452 | 1101.29 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 7 | 20 |
| 471 | 1101.57 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 478 | 1101.61 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 24 | 23 |
| 498 | 1101.84 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 2 | 21 |
| 515 | 1102.00 | wind | 7.0 | 43200 | < th | dose independent | rect. | 24 | 17 |
| 546 | 1102.31 | wind | 7.0 | 43200 | < th | dose independent | rect. | 2 | 15 |
| 557 | 1102.45 | temperature | 20.0 | 1440 | > th | dose dependent | no | NA | NA |
| 594 | 1103.03 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 18 | 11 |
| 597 | 1103.05 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 21 | 23 |
| 647 | 1104.01 | radiation | 20.0 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 651 | 1104.03 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 655 | 1104.06 | wind | 7.0 | 43200 | > th | dose independent | rect. | 24 | 17 |
| 657 | 1104.13 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 20 | 6 |
| 674 | 1104.35 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 13 | 19 |
| 677 | 1104.47 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 13 | 12 |
| 685 | 1104.61 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 24 | 19 |
| 691 | 1104.78 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 698 | 1104.90 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 13 | 14 |
| 719 | 1105.29 | wind | 7.0 | 43200 | < th | dose independent | rect. | 24 | 21 |
| 723 | 1105.34 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 20 | 6 |
| 724 | 1105.34 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 20 | 6 |
| 760 | 1105.83 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 11 | 4 |
| 780 | 1106.04 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 16 | 14 |
| 815 | 1106.52 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 858 | 1107.22 | wind | 7.0 | 43200 | > th | dose independent | rect. | 24 | 21 |
| 878 | 1107.62 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 900 | 1107.92 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 9 | 6 |
| 924 | 1108.27 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 18 | 7 |