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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0378100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Haem peroxidase, plant/fungal/bacterial family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.08 (0.538) R2 : 0.439
β1 : 13.5 (4.97) R2dD : 2.02 R2D : -3.91
β2 : 0.56 (0.228) R2dC : 0.00766 R2C : -0.548
β3 : -13.5 (4.2) R2dE : 3.69 R2E : -5.41
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 151 (39.9) R2dD*E : 8.39 R2D*E : -4.41
γ1 : -1.29 (0.201) R2dN8 : 0.0705 R2N8 : -0.731
σ : 1.73
deviance : 1380.03
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_____
C
peak time of C : 9.93
E
wheather : humidity
threshold : 49.79
memory length : 1296
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 16
open length of G : 1.02

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1375.46 1.74 3.05 13.9 0.545 -13.7 -1.08 154 -1.29 10.3 49.33 1298 16 1
1667.18 1.92 5.17 -4.98 0.831 4.28 1.19 -- -1.65 6.11 49.33 1298 16 1
1380.03 1.73 3.08 13.5 0.56 -13.5 -- 151 -1.29 9.93 49.79 1296 16 1.02
1500.24 1.8 5.02 -4.63 1.19 2.8 -- -- -1.3 5.75 55.65 798 16.4 1.36
1398.66 1.74 3.08 13.7 -- -13.7 -- 153 -1.3 -- 49.67 1299 16 1
1686.35 1.93 5.17 -4.97 0.792 -- 0.938 -- -1.67 6.3 -- -- -- --
1687.32 1.92 5.17 -4.95 0.805 -- -- -- -1.67 6.96 -- -- -- --
1444.32 1.77 5.09 -5.18 -- 2.51 -- -- -1.18 -- 57 1542 16.3 1.9
1688.24 1.91 4.8 -- 0.612 3.72 -- -- -0.652 7.34 56.3 24892 16 0.952
1721.4 1.94 5.19 -4.93 -- -- -- -- -1.65 -- -- -- -- --
2333.05 2.26 5.05 -- 0.754 -- -- -- -1.12 7.37 -- -- -- --
1641.05 1.89 4.82 -- -- 4.29 -- -- -0.317 -- 56.02 26991 16.1 0.972
2363.34 2.27 5.07 -- -- -- -- -- -1.1 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1384.04 humidity 50 1440 < th dose independent rect. 16 1
2 1384.49 humidity 50 1440 < th dose dependent rect. 16 1
3 1389.65 humidity 50 1440 > th dose independent rect. 16 1
4 1394.33 temperature 30 1440 > th dose dependent rect. 18 1
33 1401.23 humidity 70 1440 < th dose dependent rect. 17 14
34 1401.26 humidity 70 1440 < th dose dependent rect. 17 3
64 1410.82 humidity 60 1440 > th dose independent rect. 17 11
65 1410.87 humidity 60 1440 > th dose independent rect. 17 3
67 1410.97 humidity 60 1440 > th dose independent rect. 17 8
70 1411.18 humidity 60 1440 > th dose independent rect. 17 5
89 1411.58 humidity 60 1440 > th dose independent rect. 17 14
92 1412.10 humidity 60 1440 < th dose independent rect. 17 3
225 1418.81 temperature 30 1440 > th dose dependent sin 12 NA
272 1421.52 temperature 30 720 > th dose independent rect. 18 1
307 1423.66 humidity 70 1440 < th dose dependent sin 12 NA
329 1424.63 humidity 60 1440 < th dose independent sin 12 NA
419 1427.16 humidity 60 1440 > th dose independent sin 12 NA
423 1427.83 radiation 30 1440 > th dose independent rect. 16 16
503 1432.01 temperature 30 1440 < th dose independent rect. 18 6
509 1432.46 temperature 30 1440 < th dose independent rect. 18 2
513 1432.85 temperature 30 720 < th dose independent rect. 18 8
519 1433.16 radiation 30 1440 > th dose independent rect. 7 1
571 1434.43 temperature 30 1440 < th dose independent rect. 18 11
648 1435.98 temperature 30 1440 < th dose independent rect. 18 14
672 1436.29 temperature 30 1440 > th dose independent sin 12 NA
708 1436.61 temperature 30 1440 < th dose independent sin 12 NA
842 1438.98 temperature 30 1440 > th dose dependent no NA NA
972 1439.33 radiation 20 1440 > th dose dependent rect. 16 16
980 1439.73 humidity 50 1440 > th dose independent rect. 13 4
993 1440.26 temperature 25 720 > th dose dependent rect. 21 2