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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0374600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cupredoxin domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.28 (0.0222) R2 : 0.0232
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.154 (0.0468) R2dN8 : 0.0299 R2N8 : 0.0232
σ : 0.418
deviance : 80.3
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
71.64 0.398 3.29 -0.323 0.279 -0.263 0.0202 0.442 0.0418 6 91 29 -- --
72.48 0.397 3.29 -0.297 0.288 -0.255 0.214 -- 0.048 5.77 91.34 30 -- --
71.64 0.394 3.29 -0.323 0.279 -0.263 -- 0.446 0.0418 5.99 91 28 -- --
72.58 0.397 3.29 -0.299 0.284 -0.242 -- -- 0.05 5.98 91.22 33 -- --
75.02 0.403 3.29 -0.335 -- -0.165 -- 0.464 0.0721 -- 91.49 28 -- --
75.23 0.407 3.28 -0.335 0.197 -- -0.0524 -- 0.114 7.98 -- -- -- --
75.23 0.406 3.28 -0.337 0.197 -- -- -- 0.114 7.95 -- -- -- --
76.04 0.406 3.29 -0.308 -- -0.14 -- -- 0.0824 -- 91.07 28 -- --
74.87 0.403 3.29 -- 0.292 -0.269 -- -- 0.0767 5.86 91.38 28 -- --
77.35 0.411 3.28 -0.335 -- -- -- -- 0.117 -- -- -- -- --
78.22 0.414 3.27 -- 0.195 -- -- -- 0.152 8.07 -- -- -- --
78.5 0.413 3.29 -- -- -0.162 -- -- 0.111 -- 91.38 28 -- --
80.3 0.418 3.28 -- -- -- -- -- 0.154 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 68.94 temperature 20.0 10 > th dose independent rect. 6 1
2 69.05 humidity 90.0 10 < th dose independent rect. 6 1
3 69.10 atmosphere 1005.0 10 > th dose independent rect. 6 1
4 69.11 temperature 20.0 10 > th dose dependent rect. 6 1
13 69.25 radiation 30.0 30 < th dose dependent rect. 6 1
16 69.26 humidity 80.0 30 > th dose independent rect. 6 1
17 69.27 wind 5.0 30 < th dose independent rect. 6 1
20 69.27 temperature 10.0 30 > th dose independent rect. 6 1
22 69.27 temperature 30.0 30 < th dose independent rect. 6 1
23 69.27 humidity 50.0 30 > th dose independent rect. 6 1
26 69.27 atmosphere 995.0 30 > th dose independent rect. 6 1
27 69.27 atmosphere 1015.0 30 < th dose independent rect. 6 1
28 69.27 radiation 20.0 30 < th dose independent rect. 6 1
31 69.27 precipitation 0.1 30 < th dose independent rect. 6 1
32 69.27 temperature 10.0 30 > th dose independent rect. 7 23
33 69.27 wind 7.0 30 < th dose dependent rect. 6 1
35 69.27 precipitation 0.1 30 < th dose dependent rect. 6 1
37 69.28 radiation 1.0 30 > th dose independent rect. 6 1
41 69.31 wind 9.0 1440 < th dose independent rect. 7 1
42 69.31 temperature 10.0 1440 > th dose independent rect. 7 1
46 69.31 temperature 30.0 1440 < th dose independent rect. 7 1
50 69.31 humidity 50.0 1440 > th dose independent rect. 7 1
55 69.31 atmosphere 995.0 1440 > th dose independent rect. 7 1
56 69.31 atmosphere 1015.0 1440 < th dose independent rect. 7 1
57 69.31 temperature 10.0 1440 > th dose independent rect. 8 23
60 69.31 humidity 50.0 30 > th dose dependent rect. 6 1
65 69.34 atmosphere 995.0 30 > th dose dependent rect. 6 1
71 69.38 atmosphere 1015.0 30 < th dose dependent rect. 6 1
73 69.41 wind 1.0 30 > th dose independent rect. 6 1
95 69.45 humidity 90.0 30 < th dose dependent rect. 6 1
97 69.50 radiation 1.0 10 > th dose dependent rect. 6 1
109 69.73 temperature 30.0 30 < th dose dependent rect. 6 1
111 69.79 wind 1.0 30 > th dose dependent rect. 6 1
115 69.87 wind 9.0 30 < th dose independent rect. 7 23
118 69.92 precipitation 0.1 30 < th dose independent rect. 7 23
119 69.92 precipitation 0.1 30 < th dose dependent rect. 7 23
121 70.10 atmosphere 995.0 30 > th dose independent rect. 7 23
123 70.16 humidity 50.0 30 > th dose independent rect. 7 23
127 70.28 temperature 25.0 720 > th dose independent rect. 19 3
133 70.44 temperature 25.0 30 > th dose dependent rect. 24 8
148 70.59 temperature 25.0 720 > th dose independent rect. 14 17
150 70.60 wind 1.0 30 > th dose independent rect. 7 23
155 70.73 precipitation 0.1 720 < th dose independent rect. 15 16
156 70.73 precipitation 0.1 720 < th dose dependent rect. 15 16
161 70.75 radiation 1.0 30 > th dose dependent rect. 15 16
165 70.78 precipitation 0.1 720 < th dose independent rect. 19 8
166 70.78 precipitation 0.1 720 < th dose dependent rect. 19 8
170 70.79 temperature 20.0 10 > th dose dependent rect. 15 16
176 70.81 temperature 20.0 30 > th dose dependent rect. 19 12
178 70.82 radiation 10.0 10 > th dose independent rect. 16 15
186 70.88 radiation 10.0 10 < th dose independent rect. 6 5
200 70.98 temperature 25.0 720 > th dose independent sin 14 NA
203 71.00 temperature 25.0 720 > th dose independent rect. 14 11
211 71.04 wind 9.0 720 < th dose independent rect. 19 8
213 71.06 temperature 25.0 720 > th dose independent rect. 19 12
223 71.09 temperature 25.0 720 < th dose independent rect. 14 18
235 71.12 temperature 20.0 720 > th dose dependent rect. 19 6
236 71.13 radiation 40.0 90 > th dose independent rect. 15 1
250 71.13 radiation 1.0 90 > th dose independent rect. 18 13
256 71.13 radiation 40.0 90 > th dose dependent rect. 15 1
279 71.15 radiation 1.0 90 > th dose independent rect. 4 3
291 71.15 radiation 20.0 10 > th dose dependent rect. 16 1
327 71.17 temperature 10.0 720 > th dose independent rect. 19 8
328 71.17 temperature 30.0 720 < th dose independent rect. 19 8
329 71.17 humidity 50.0 720 > th dose independent rect. 19 8
330 71.17 atmosphere 995.0 720 > th dose independent rect. 19 8
331 71.17 radiation 1.0 720 < th dose independent rect. 19 8
337 71.17 temperature 10.0 720 > th dose independent rect. 3 16
339 71.17 radiation 1.0 720 < th dose dependent rect. 19 8
351 71.20 temperature 10.0 720 > th dose independent rect. 7 8
352 71.20 atmosphere 1015.0 720 < th dose independent rect. 7 8
354 71.20 temperature 10.0 720 > th dose independent rect. 15 16
355 71.20 humidity 50.0 30 > th dose dependent rect. 7 23
381 71.22 atmosphere 995.0 720 > th dose independent rect. 7 8
389 71.26 atmosphere 995.0 720 > th dose independent rect. 15 16
410 71.28 temperature 25.0 720 < th dose independent sin 12 NA
413 71.28 atmosphere 995.0 720 > th dose independent rect. 3 16
433 71.34 radiation 1.0 90 > th dose dependent rect. 4 3
467 71.37 radiation 20.0 10 > th dose independent rect. 16 1
503 71.38 temperature 20.0 270 > th dose dependent rect. 17 14
521 71.43 temperature 20.0 720 > th dose dependent rect. 19 1
529 71.45 humidity 90.0 90 < th dose independent rect. 3 4
571 71.47 temperature 20.0 10 > th dose dependent sin 10 NA
626 71.55 atmosphere 1005.0 720 < th dose independent rect. 10 1
647 71.57 temperature 20.0 720 > th dose dependent rect. 14 13
657 71.60 temperature 10.0 720 > th dose dependent rect. 19 7
660 71.61 humidity 90.0 90 < th dose independent rect. 15 16
668 71.62 precipitation 0.1 720 < th dose independent rect. 7 8
672 71.62 precipitation 0.1 720 < th dose dependent rect. 7 8
685 71.64 temperature 20.0 270 > th dose dependent rect. 15 16
750 71.71 wind 1.0 90 < th dose dependent rect. 15 1
766 71.74 humidity 60.0 10 < th dose independent rect. 15 1
780 71.76 temperature 20.0 720 > th dose dependent sin 15 NA
803 71.79 atmosphere 1005.0 720 < th dose independent rect. 8 8
829 71.80 temperature 20.0 30 > th dose independent rect. 5 22
870 71.85 radiation 1.0 90 < th dose independent sin 9 NA
877 71.86 radiation 1.0 90 < th dose independent rect. 21 15
890 71.88 radiation 1.0 90 > th dose independent sin 9 NA
891 71.88 radiation 1.0 90 < th dose independent rect. 21 13
903 71.89 radiation 1.0 90 < th dose independent rect. 21 11
918 71.90 radiation 1.0 90 < th dose independent rect. 21 18
919 71.90 temperature 20.0 720 > th dose dependent rect. 15 1
920 71.90 humidity 70.0 10 < th dose dependent rect. 15 1
939 71.92 humidity 90.0 30 > th dose independent rect. 3 23
944 71.93 temperature 15.0 4320 > th dose independent rect. 7 4
963 71.95 humidity 90.0 30 > th dose dependent rect. 3 23
965 71.96 wind 1.0 720 > th dose independent rect. 7 8
973 71.96 radiation 1.0 90 < th dose dependent rect. 21 22