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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0374400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.05 (0.018) R2 : 0.00115
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0275 (0.0378) R2dN8 : 0.00149 R2N8 : 0.00115
σ : 0.338
deviance : 52.57
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
49.86 0.329 3.04 0.0553 0.0933 -0.219 0.289 0.156 0.0335 12 1010 10 -- --
49.93 0.332 3.04 0.0448 0.0937 -0.224 0.264 -- 0.0318 11.9 1010 10 -- --
50.11 0.332 3.04 0.0613 0.102 -0.216 -- 0.105 0.0331 10.3 1010 10 -- --
50.15 0.332 3.04 0.054 0.102 -0.219 -- -- 0.032 10.3 1010 10 -- --
50.73 0.334 3.04 0.0604 -- -0.236 -- 0.101 0.0328 -- 1010 10 -- --
51.43 0.336 3.04 0.0363 0.119 -- 0.231 -- 0.0324 11.1 -- -- -- --
51.59 0.336 3.04 0.0445 0.124 -- -- -- 0.0323 10 -- -- -- --
50.77 0.333 3.04 0.0533 -- -0.239 -- -- 0.0317 -- 1010 10 -- --
50.22 0.332 3.04 -- 0.102 -0.217 -- -- 0.026 10.2 1010 9 -- --
52.52 0.339 3.04 0.043 -- -- -- -- 0.0322 -- -- -- -- --
51.64 0.336 3.04 -- 0.124 -- -- -- 0.0274 9.98 -- -- -- --
50.84 0.333 3.05 -- -- -0.237 -- -- 0.0258 -- 1010 10 -- --
52.57 0.338 3.05 -- -- -- -- -- 0.0275 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 38.67 radiation 10.0 10 > th dose independent rect. 6 1
27 38.67 radiation 10.0 10 > th dose dependent rect. 6 1
56 42.69 wind 3.0 30 < th dose dependent rect. 6 1
58 42.94 atmosphere 1005.0 30 > th dose dependent rect. 6 1
61 43.78 humidity 80.0 30 > th dose dependent rect. 6 1
63 44.29 temperature 30.0 30 < th dose dependent rect. 6 1
71 45.04 wind 3.0 30 < th dose independent rect. 6 1
77 45.62 temperature 20.0 30 > th dose independent rect. 6 1
80 45.66 wind 9.0 1440 < th dose independent rect. 7 1
81 45.66 temperature 10.0 1440 > th dose independent rect. 7 1
85 45.66 temperature 30.0 1440 < th dose independent rect. 7 1
89 45.66 humidity 50.0 1440 > th dose independent rect. 7 1
94 45.66 atmosphere 995.0 1440 > th dose independent rect. 7 1
95 45.66 atmosphere 1015.0 1440 < th dose independent rect. 7 1
97 45.66 temperature 10.0 1440 > th dose independent rect. 8 23
100 45.68 humidity 80.0 30 > th dose independent rect. 6 1
101 45.69 humidity 90.0 30 < th dose independent rect. 6 1
103 45.71 atmosphere 1005.0 30 > th dose independent rect. 6 1
107 45.72 temperature 10.0 30 > th dose independent rect. 6 1
109 45.72 temperature 30.0 30 < th dose independent rect. 6 1
110 45.72 humidity 50.0 30 > th dose independent rect. 6 1
113 45.72 atmosphere 995.0 30 > th dose independent rect. 6 1
115 45.72 atmosphere 1015.0 30 < th dose independent rect. 6 1
116 45.72 radiation 20.0 30 < th dose independent rect. 6 1
119 45.72 precipitation 0.1 30 < th dose independent rect. 6 1
120 45.72 temperature 10.0 30 > th dose independent rect. 7 23
121 45.72 precipitation 0.1 30 < th dose dependent rect. 6 1
122 45.73 radiation 10.0 10 < th dose dependent rect. 6 1
123 45.76 wind 1.0 30 > th dose independent rect. 6 1
135 46.15 temperature 10.0 30 > th dose dependent rect. 6 1
158 46.36 wind 9.0 30 < th dose independent rect. 7 23
186 47.31 atmosphere 995.0 30 > th dose independent rect. 7 23
190 47.38 precipitation 0.1 30 < th dose independent rect. 7 23
191 47.38 precipitation 0.1 30 < th dose dependent rect. 7 23
200 47.67 atmosphere 1015.0 30 < th dose dependent rect. 6 1
201 47.72 humidity 90.0 10 < th dose dependent rect. 6 1
206 47.98 temperature 30.0 30 < th dose independent rect. 7 23
229 48.12 atmosphere 1005.0 90 > th dose dependent rect. 2 5
291 48.56 humidity 50.0 30 > th dose independent rect. 7 23
300 48.60 atmosphere 1015.0 30 < th dose independent rect. 7 23
307 48.63 atmosphere 1005.0 270 > th dose dependent rect. 3 1
310 48.65 humidity 90.0 30 < th dose independent rect. 3 4
360 48.93 wind 1.0 30 > th dose dependent rect. 6 1
363 48.95 atmosphere 1010.0 10 < th dose independent sin 7 NA
416 49.27 wind 1.0 30 > th dose independent rect. 7 23
421 49.29 temperature 20.0 30 > th dose dependent rect. 2 5
445 49.41 wind 3.0 270 > th dose independent rect. 3 1
456 49.44 radiation 10.0 30 > th dose independent sin 11 NA
479 49.49 wind 9.0 4320 > th dose dependent rect. 13 1
497 49.56 atmosphere 1010.0 10 < th dose independent rect. 24 23
519 49.62 radiation 1.0 90 > th dose independent rect. 9 22
530 49.66 atmosphere 1010.0 10 < th dose independent rect. 24 10
572 49.70 atmosphere 995.0 90 > th dose dependent rect. 19 12
590 49.74 wind 9.0 720 < th dose dependent rect. 19 2
615 49.77 temperature 10.0 720 > th dose independent rect. 11 8
616 49.77 atmosphere 1015.0 720 < th dose independent rect. 11 8
617 49.77 temperature 10.0 720 > th dose independent rect. 19 16
618 49.77 atmosphere 995.0 720 > th dose independent rect. 19 16
628 49.78 wind 9.0 720 < th dose independent rect. 23 8
629 49.78 atmosphere 1010.0 10 < th dose independent rect. 3 20
632 49.78 atmosphere 1010.0 10 < th dose independent rect. 11 23
636 49.79 temperature 10.0 720 > th dose independent rect. 23 8
637 49.79 temperature 30.0 720 < th dose independent rect. 23 8
638 49.79 humidity 50.0 720 > th dose independent rect. 23 8
640 49.79 atmosphere 995.0 720 > th dose independent rect. 23 8
641 49.79 radiation 40.0 720 < th dose independent rect. 23 8
642 49.79 atmosphere 1010.0 10 < th dose independent rect. 18 15
643 49.79 wind 9.0 720 < th dose independent rect. 19 16
644 49.79 temperature 10.0 720 > th dose independent rect. 7 16
648 49.79 temperature 10.0 30 > th dose dependent rect. 7 23
649 49.80 wind 7.0 720 < th dose independent rect. 19 2
652 49.80 radiation 20.0 10 < th dose independent rect. 7 23
653 49.80 atmosphere 995.0 90 > th dose dependent rect. 17 14
716 49.85 humidity 50.0 720 > th dose independent rect. 19 16
725 49.86 atmosphere 1010.0 10 < th dose independent no NA NA
742 49.88 atmosphere 1010.0 10 < th dose independent rect. 16 18
758 49.89 humidity 50.0 720 > th dose independent rect. 7 8
759 49.89 atmosphere 1000.0 90 > th dose independent rect. 19 12
768 49.90 temperature 30.0 720 < th dose independent rect. 19 16
770 49.90 atmosphere 1010.0 10 < th dose independent rect. 14 20
781 49.91 humidity 90.0 10 < th dose dependent rect. 3 4
786 49.92 atmosphere 1010.0 10 < th dose independent rect. 3 7
788 49.92 atmosphere 1010.0 10 < th dose independent rect. 3 9
798 49.92 atmosphere 995.0 90 > th dose dependent rect. 15 16
799 49.93 atmosphere 1010.0 10 < th dose independent rect. 3 23
809 49.94 wind 7.0 10 < th dose dependent rect. 23 9
831 49.97 atmosphere 1000.0 720 > th dose independent rect. 19 2
836 49.97 atmosphere 1010.0 10 < th dose independent rect. 13 23
846 49.98 temperature 25.0 4320 > th dose dependent rect. 7 1
848 49.98 atmosphere 995.0 720 > th dose dependent rect. 19 2
859 49.99 atmosphere 1010.0 10 < th dose independent rect. 21 13
860 49.99 atmosphere 1000.0 90 > th dose independent rect. 17 14
865 49.99 radiation 30.0 10 < th dose dependent rect. 7 23
899 50.03 humidity 60.0 720 > th dose independent rect. 14 5
903 50.03 atmosphere 1000.0 10 > th dose independent rect. 16 14
913 50.03 wind 9.0 90 < th dose dependent rect. 19 12
935 50.06 wind 1.0 720 > th dose independent rect. 3 4
939 50.06 wind 5.0 90 < th dose independent rect. 22 9
956 50.07 radiation 1.0 720 > th dose independent rect. 7 2
960 50.07 wind 5.0 10 < th dose independent rect. 23 9
963 50.07 atmosphere 1000.0 10 > th dose independent rect. 18 12
965 50.07 humidity 50.0 720 > th dose independent rect. 21 22
991 50.08 atmosphere 1000.0 90 > th dose independent rect. 7 12
996 50.08 atmosphere 995.0 720 > th dose independent rect. 21 22