Os01g0374200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os01g0374200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 166.19 | 0.606 | 4.7 | 1.76 | 2.81 | -1.25 | 1.7 | -0.0394 | 0.104 | 19.1 | 20.02 | 28 | -- | -- |
| 166.2 | 0.6 | 4.7 | 1.77 | 2.81 | -1.24 | 1.7 | -- | 0.105 | 19.1 | 20.01 | 26 | -- | -- |
| 173.73 | 0.614 | 4.7 | 1.73 | 2.81 | -1.23 | -- | -0.0203 | 0.105 | 19.1 | 20.1 | 31 | -- | -- |
| 173.65 | 0.614 | 4.7 | 1.72 | 2.81 | -1.24 | -- | -- | 0.103 | 19.1 | 19.97 | 20 | -- | -- |
| 589.07 | 1.13 | 4.63 | 1.74 | -- | -1.2 | -- | 0.267 | 0.0795 | -- | 20.3 | 31 | -- | -- |
| 226.56 | 0.706 | 4.75 | 1.44 | 2.81 | -- | 1.44 | -- | -0.119 | 19.5 | -- | -- | -- | -- |
| 232.23 | 0.714 | 4.75 | 1.41 | 2.81 | -- | -- | -- | -0.116 | 19.5 | -- | -- | -- | -- |
| 589.28 | 1.13 | 4.63 | 1.69 | -- | -1.22 | -- | -- | 0.0642 | -- | 20.4 | 34 | -- | -- |
| 249.65 | 0.736 | 4.74 | -- | 2.81 | -0.94 | -- | -- | -0.055 | 19.2 | 20.1 | 30 | -- | -- |
| 654.71 | 1.2 | 4.69 | 1.36 | -- | -- | -- | -- | -0.16 | -- | -- | -- | -- | -- |
| 284.51 | 0.789 | 4.79 | -- | 2.8 | -- | -- | -- | -0.272 | 19.5 | -- | -- | -- | -- |
| 656.87 | 1.2 | 4.68 | -- | -- | -0.983 | -- | -- | -0.152 | -- | 20.54 | 2 | -- | -- |
| 703.84 | 1.24 | 4.72 | -- | -- | -- | -- | -- | -0.312 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 163.59 | temperature | 15 | 90 | > th | dose dependent | sin | 9 | NA |
| 6 | 165.04 | temperature | 25 | 270 | < th | dose dependent | rect. | 10 | 20 |
| 7 | 165.22 | temperature | 20 | 10 | < th | dose independent | rect. | 12 | 22 |
| 13 | 165.45 | temperature | 20 | 10 | < th | dose independent | rect. | 12 | 20 |
| 18 | 165.54 | temperature | 30 | 90 | < th | dose dependent | sin | 9 | NA |
| 21 | 165.62 | temperature | 20 | 10 | < th | dose independent | rect. | 22 | 22 |
| 27 | 165.83 | temperature | 30 | 270 | < th | dose dependent | rect. | 20 | 10 |
| 35 | 165.98 | temperature | 25 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 42 | 166.20 | temperature | 20 | 10 | > th | dose independent | rect. | 15 | 23 |
| 43 | 166.22 | temperature | 20 | 30 | > th | dose independent | no | NA | NA |
| 45 | 166.24 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 15 |
| 46 | 166.25 | temperature | 20 | 10 | < th | dose independent | rect. | 5 | 23 |
| 52 | 166.38 | temperature | 20 | 30 | < th | dose independent | no | NA | NA |
| 53 | 166.38 | temperature | 20 | 30 | < th | dose independent | rect. | 9 | 23 |
| 58 | 166.42 | temperature | 20 | 30 | < th | dose independent | rect. | 17 | 23 |
| 59 | 166.43 | temperature | 20 | 30 | < th | dose independent | rect. | 15 | 23 |
| 60 | 166.46 | temperature | 20 | 30 | < th | dose independent | rect. | 7 | 23 |
| 61 | 166.46 | temperature | 20 | 30 | < th | dose independent | rect. | 19 | 23 |
| 62 | 166.48 | temperature | 20 | 30 | > th | dose independent | sin | 11 | NA |
| 63 | 166.49 | temperature | 20 | 30 | < th | dose independent | rect. | 3 | 23 |
| 67 | 166.60 | temperature | 20 | 270 | > th | dose independent | rect. | 15 | 11 |
| 74 | 166.68 | temperature | 20 | 30 | < th | dose independent | rect. | 1 | 23 |
| 138 | 167.78 | temperature | 25 | 10 | < th | dose dependent | rect. | 12 | 20 |
| 231 | 169.00 | temperature | 20 | 10 | > th | dose independent | rect. | 7 | 23 |
| 249 | 169.27 | temperature | 20 | 270 | > th | dose independent | rect. | 17 | 17 |
| 250 | 169.32 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 17 |
| 257 | 169.39 | temperature | 20 | 270 | > th | dose independent | rect. | 5 | 22 |
| 292 | 169.69 | temperature | 25 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 359 | 170.31 | temperature | 20 | 270 | > th | dose independent | rect. | 15 | 20 |
| 387 | 170.49 | temperature | 25 | 10 | < th | dose dependent | rect. | 10 | 22 |
| 406 | 170.58 | temperature | 25 | 270 | < th | dose dependent | sin | 13 | NA |
| 454 | 170.80 | temperature | 25 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 484 | 170.98 | temperature | 25 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 493 | 171.03 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |
| 529 | 171.26 | temperature | 25 | 90 | < th | dose dependent | rect. | 7 | 23 |
| 534 | 171.29 | temperature | 25 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 536 | 171.30 | temperature | 20 | 90 | > th | dose independent | rect. | 20 | 15 |
| 537 | 171.30 | temperature | 25 | 10 | < th | dose dependent | no | NA | NA |
| 544 | 171.32 | temperature | 25 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 553 | 171.37 | temperature | 25 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 559 | 171.44 | temperature | 20 | 10 | < th | dose independent | sin | 10 | NA |
| 564 | 171.45 | temperature | 25 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 583 | 171.56 | temperature | 20 | 270 | < th | dose independent | rect. | 9 | 20 |
| 615 | 171.68 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 9 |
| 621 | 171.71 | temperature | 25 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 666 | 171.97 | temperature | 25 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 781 | 172.80 | temperature | 20 | 30 | > th | dose independent | rect. | 3 | 23 |
| 809 | 173.01 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 9 |
| 814 | 173.03 | temperature | 25 | 90 | < th | dose dependent | rect. | 21 | 14 |
| 865 | 173.29 | temperature | 20 | 10 | > th | dose independent | rect. | 18 | 19 |
| 951 | 173.78 | temperature | 20 | 10 | < th | dose independent | rect. | 22 | 12 |
| 992 | 174.00 | temperature | 20 | 10 | < th | dose independent | rect. | 22 | 10 |