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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0373800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.94 (0.035) R2 : 0.106
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.542 (0.0736) R2dN8 : 0.137 R2N8 : 0.106
σ : 0.659
deviance : 199.2
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
190.19 0.648 2.94 0.211 0.128 1.74 0.615 1.23 0.581 2.42 1015 1066 -- --
190.36 0.643 2.93 0.213 0.141 1.26 0.663 -- 0.584 2.34 1015 1128 -- --
191.43 0.644 2.94 0.204 0.137 2.15 -- 1.83 0.572 2.69 1015 1215 -- --
191.83 0.645 2.93 0.198 0.141 1.35 -- -- 0.579 2.47 1015 1123 -- --
192.43 0.646 2.94 0.21 -- 2.35 -- 2.36 0.581 -- 1015 1207 -- --
195.45 0.655 2.94 0.15 0.121 -- 0.795 -- 0.559 2.04 -- -- -- --
197.83 0.659 2.94 0.126 0.126 -- -- -- 0.554 2.75 -- -- -- --
192.89 0.647 2.93 0.205 -- 1.27 -- -- 0.582 -- 1015 978 -- --
192.79 0.647 2.94 -- 0.146 1.23 -- -- 0.557 2.48 1015 1146 -- --
198.75 0.659 2.94 0.131 -- -- -- -- 0.557 -- -- -- -- --
198.25 0.659 2.94 -- 0.128 -- -- -- 0.54 2.76 -- -- -- --
193.97 0.649 2.94 -- -- 1.18 -- -- 0.562 -- 1015 978 -- --
199.2 0.659 2.94 -- -- -- -- -- 0.542 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 182.87 wind 1.0 30 < th dose dependent rect. 2 2
3 184.30 wind 1.0 10 < th dose independent rect. 3 1
5 184.37 temperature 20.0 30 > th dose dependent rect. 2 1
6 184.56 temperature 20.0 30 > th dose independent rect. 2 1
7 184.74 radiation 1.0 90 < th dose independent rect. 10 3
8 184.74 radiation 1.0 90 < th dose dependent rect. 10 3
12 184.95 atmosphere 1005.0 30 > th dose dependent rect. 2 1
13 185.03 humidity 80.0 30 > th dose independent rect. 2 1
18 185.35 humidity 80.0 30 > th dose dependent rect. 2 1
19 185.37 atmosphere 1005.0 30 > th dose independent rect. 2 1
32 185.77 temperature 25.0 30 < th dose independent rect. 2 1
33 185.80 wind 9.0 30 < th dose independent rect. 2 1
34 185.80 temperature 10.0 30 > th dose independent rect. 2 1
37 185.80 humidity 50.0 30 > th dose independent rect. 2 1
41 185.80 atmosphere 1010.0 30 < th dose independent rect. 2 1
43 185.80 radiation 1.0 30 < th dose independent rect. 2 1
48 185.80 precipitation 0.1 30 < th dose independent rect. 2 1
49 185.80 temperature 10.0 30 > th dose independent rect. 3 23
50 185.80 radiation 1.0 30 < th dose dependent rect. 2 1
55 185.80 precipitation 0.1 30 < th dose dependent rect. 2 1
61 186.23 humidity 80.0 90 > th dose dependent rect. 12 1
62 186.58 temperature 25.0 14400 > th dose dependent rect. 4 1
66 186.77 atmosphere 1015.0 30 < th dose dependent rect. 2 1
68 186.94 wind 1.0 30 < th dose dependent rect. 3 6
70 186.98 humidity 80.0 90 > th dose independent rect. 12 1
71 187.10 wind 1.0 720 < th dose independent rect. 2 2
74 187.12 temperature 30.0 14400 > th dose dependent rect. 18 1
90 187.24 wind 1.0 720 < th dose dependent rect. 2 2
94 187.32 radiation 1.0 10 < th dose independent rect. 13 1
104 187.32 radiation 1.0 10 < th dose dependent rect. 13 1
120 187.41 temperature 30.0 14400 < th dose independent rect. 18 15
123 187.49 temperature 30.0 14400 < th dose independent rect. 1 9
124 187.49 temperature 30.0 14400 > th dose independent rect. 18 16
127 187.52 temperature 30.0 14400 > th dose dependent rect. 9 1
144 187.53 temperature 30.0 14400 < th dose independent rect. 4 6
146 187.53 temperature 30.0 30 < th dose dependent rect. 2 1
154 187.55 temperature 30.0 14400 > th dose independent rect. 8 2
155 187.55 temperature 30.0 14400 < th dose independent rect. 8 2
194 187.63 wind 1.0 30 < th dose dependent rect. 24 4
195 187.65 temperature 30.0 14400 < th dose independent rect. 18 1
197 187.65 wind 1.0 30 < th dose dependent rect. 5 23
201 187.68 temperature 30.0 14400 < th dose independent rect. 18 13
240 187.76 temperature 30.0 14400 < th dose independent rect. 18 9
258 187.84 humidity 90.0 43200 > th dose dependent rect. 11 1
263 187.87 humidity 90.0 43200 > th dose independent rect. 11 2
266 187.88 temperature 25.0 14400 > th dose dependent rect. 21 1
300 187.92 temperature 30.0 14400 > th dose independent rect. 18 1
317 187.93 temperature 25.0 90 < th dose dependent rect. 10 8
324 187.98 humidity 80.0 43200 < th dose independent rect. 9 2
325 187.98 wind 1.0 1440 < th dose dependent rect. 15 1
329 188.00 temperature 30.0 14400 > th dose dependent sin 10 NA
357 188.04 temperature 25.0 10 < th dose dependent rect. 11 7
371 188.10 temperature 25.0 90 < th dose dependent rect. 11 6
372 188.11 temperature 25.0 14400 > th dose independent rect. 5 1
374 188.12 humidity 80.0 43200 > th dose independent rect. 9 1
406 188.21 temperature 25.0 14400 > th dose dependent rect. 21 10
424 188.23 wind 9.0 43200 < th dose independent rect. 21 8
426 188.24 humidity 70.0 43200 > th dose dependent rect. 9 2
435 188.27 wind 1.0 1440 < th dose independent rect. 15 1
447 188.30 humidity 80.0 43200 > th dose independent rect. 8 3
454 188.32 wind 7.0 43200 < th dose independent rect. 2 2
498 188.36 wind 7.0 43200 > th dose independent rect. 22 7
500 188.36 wind 5.0 43200 > th dose dependent rect. 4 1
502 188.37 temperature 30.0 14400 < th dose independent sin 9 NA
503 188.37 radiation 30.0 43200 > th dose independent rect. 15 2
518 188.38 temperature 30.0 14400 > th dose independent sin 9 NA
523 188.39 wind 7.0 43200 > th dose independent rect. 2 2
547 188.42 temperature 25.0 14400 < th dose independent rect. 5 1
572 188.44 wind 7.0 43200 < th dose independent rect. 4 1
574 188.44 wind 7.0 43200 > th dose independent rect. 1 4
589 188.46 wind 7.0 43200 > th dose dependent rect. 22 7
624 188.52 wind 7.0 43200 > th dose independent rect. 22 2
627 188.53 wind 5.0 43200 > th dose independent rect. 4 1
628 188.53 wind 5.0 43200 > th dose independent rect. 8 1
636 188.54 humidity 70.0 43200 > th dose dependent rect. 8 4
647 188.56 precipitation 0.1 30 > th dose independent rect. 23 1
652 188.56 precipitation 0.1 30 > th dose dependent rect. 23 1
666 188.60 wind 7.0 43200 < th dose independent rect. 22 2
675 188.62 wind 9.0 43200 < th dose independent rect. 21 4
708 188.66 wind 5.0 43200 < th dose independent rect. 8 1
710 188.66 temperature 30.0 14400 > th dose dependent no NA NA
711 188.66 wind 7.0 43200 > th dose dependent rect. 22 2
715 188.66 temperature 30.0 14400 > th dose dependent rect. 8 11
808 188.67 radiation 10.0 43200 > th dose independent rect. 15 1
862 188.71 wind 1.0 30 > th dose independent rect. 2 1
952 188.75 temperature 15.0 10 > th dose dependent rect. 16 23
988 188.79 humidity 90.0 43200 < th dose independent rect. 11 3
999 188.80 wind 1.0 30 < th dose dependent rect. 17 11