Os01g0373700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0373700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 224.55 | 0.704 | 3.17 | 0.086 | 0.23 | 4.96 | -0.315 | -19.2 | 0.0203 | 4 | 90.05 | 35 | 12.9 | 3.36 |
| 231.34 | 0.708 | 3.16 | 0.138 | 0.239 | 4.41 | -0.156 | -- | 0.0208 | 3.8 | 90.19 | 9 | 13.2 | 3.84 |
| 224.82 | 0.698 | 3.17 | 0.0899 | 0.227 | 4.96 | -- | -19.1 | 0.0222 | 3.72 | 90.07 | 34 | 12.8 | 3.51 |
| 231.41 | 0.708 | 3.16 | 0.14 | 0.238 | 4.42 | -- | -- | 0.0216 | 3.66 | 90.19 | 9 | 13.2 | 3.84 |
| 227.63 | 0.703 | 3.17 | 0.1 | -- | 4.88 | -- | -19.3 | 0.0271 | -- | 90.09 | 33 | 12.9 | 4.04 |
| 254.38 | 0.748 | 3.16 | 0.141 | 0.189 | -- | -0.22 | -- | 0.00393 | 4.24 | -- | -- | -- | -- |
| 254.51 | 0.747 | 3.16 | 0.143 | 0.187 | -- | -- | -- | 0.00513 | 3.96 | -- | -- | -- | -- |
| 234.53 | 0.713 | 3.16 | 0.15 | -- | 4.29 | -- | -- | 0.0274 | -- | 90.29 | 9 | 13.2 | 3.87 |
| 231.92 | 0.709 | 3.16 | -- | 0.24 | 4.42 | -- | -- | 0.00611 | 3.65 | 90.19 | 9 | 13.2 | 3.81 |
| 256.42 | 0.748 | 3.17 | 0.15 | -- | -- | -- | -- | 0.0101 | -- | -- | -- | -- | -- |
| 255.04 | 0.747 | 3.17 | -- | 0.19 | -- | -- | -- | -0.0108 | 3.95 | -- | -- | -- | -- |
| 235.12 | 0.714 | 3.16 | -- | -- | 4.29 | -- | -- | 0.0108 | -- | 90.31 | 9 | 13.2 | 3.89 |
| 257.02 | 0.748 | 3.17 | -- | -- | -- | -- | -- | -0.00656 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 224.70 | humidity | 90 | 30 | > th | dose independent | rect. | 13 | 3 |
| 5 | 224.71 | humidity | 90 | 30 | > th | dose dependent | rect. | 13 | 3 |
| 9 | 224.74 | humidity | 90 | 30 | > th | dose independent | rect. | 13 | 1 |
| 13 | 224.74 | humidity | 90 | 30 | > th | dose dependent | rect. | 13 | 1 |
| 41 | 226.27 | wind | 1 | 90 | < th | dose dependent | rect. | 12 | 1 |
| 46 | 229.68 | temperature | 30 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 60 | 230.20 | wind | 1 | 270 | < th | dose dependent | rect. | 2 | 1 |
| 61 | 230.61 | wind | 1 | 90 | < th | dose independent | rect. | 12 | 1 |
| 64 | 233.20 | temperature | 30 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 78 | 233.52 | temperature | 30 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 79 | 233.67 | temperature | 30 | 4320 | < th | dose independent | rect. | 4 | 5 |
| 81 | 233.81 | wind | 9 | 30 | > th | dose independent | rect. | 1 | 10 |
| 85 | 233.81 | wind | 9 | 30 | > th | dose dependent | rect. | 1 | 10 |
| 89 | 233.82 | wind | 9 | 10 | > th | dose independent | rect. | 19 | 16 |
| 90 | 233.82 | wind | 9 | 10 | > th | dose dependent | rect. | 19 | 16 |
| 99 | 233.93 | humidity | 60 | 10 | < th | dose independent | rect. | 10 | 1 |
| 101 | 233.93 | humidity | 60 | 10 | < th | dose dependent | rect. | 10 | 1 |
| 105 | 233.96 | wind | 5 | 10 | > th | dose independent | rect. | 10 | 1 |
| 109 | 233.96 | wind | 5 | 10 | > th | dose dependent | rect. | 10 | 1 |
| 165 | 234.24 | temperature | 30 | 4320 | < th | dose independent | rect. | 19 | 14 |
| 187 | 234.42 | temperature | 30 | 4320 | < th | dose independent | rect. | 23 | 10 |
| 207 | 235.39 | wind | 1 | 270 | < th | dose independent | rect. | 2 | 1 |
| 360 | 237.02 | radiation | 10 | 10 | < th | dose dependent | rect. | 14 | 1 |
| 413 | 238.85 | wind | 1 | 270 | < th | dose dependent | rect. | 10 | 17 |
| 427 | 239.46 | atmosphere | 995 | 10 | > th | dose independent | sin | 6 | NA |
| 430 | 239.59 | atmosphere | 995 | 90 | < th | dose dependent | rect. | 18 | 21 |
| 431 | 239.61 | atmosphere | 995 | 90 | < th | dose independent | rect. | 18 | 21 |
| 433 | 239.65 | atmosphere | 995 | 10 | < th | dose independent | sin | 6 | NA |
| 436 | 239.66 | atmosphere | 995 | 10 | < th | dose dependent | sin | 6 | NA |
| 442 | 239.72 | atmosphere | 995 | 90 | < th | dose independent | rect. | 14 | 1 |
| 443 | 239.72 | atmosphere | 995 | 10 | < th | dose independent | rect. | 15 | 1 |
| 570 | 239.72 | atmosphere | 995 | 90 | < th | dose dependent | rect. | 14 | 1 |
| 571 | 239.72 | atmosphere | 995 | 10 | < th | dose dependent | rect. | 15 | 1 |
| 719 | 239.82 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 2 | 2 |
| 725 | 239.87 | humidity | 80 | 90 | < th | dose dependent | rect. | 23 | 9 |
| 733 | 239.93 | humidity | 80 | 10 | < th | dose dependent | rect. | 23 | 9 |
| 743 | 239.95 | humidity | 80 | 90 | < th | dose dependent | rect. | 1 | 7 |
| 779 | 240.15 | radiation | 30 | 30 | > th | dose dependent | rect. | 7 | 2 |
| 915 | 240.35 | humidity | 80 | 90 | < th | dose independent | rect. | 3 | 4 |
| 921 | 240.37 | radiation | 20 | 30 | > th | dose independent | rect. | 16 | 16 |
| 939 | 240.39 | radiation | 30 | 90 | > th | dose independent | rect. | 7 | 1 |
| 962 | 240.41 | radiation | 10 | 30 | < th | dose dependent | rect. | 12 | 3 |
| 963 | 240.42 | humidity | 80 | 90 | < th | dose independent | rect. | 6 | 1 |
| 964 | 240.42 | radiation | 30 | 10 | > th | dose independent | rect. | 7 | 1 |
| 983 | 240.43 | humidity | 80 | 10 | < th | dose dependent | rect. | 7 | 1 |