Os01g0373500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0373500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 411.7 | 0.953 | 3.15 | 0.375 | 0.0224 | 18.7 | 0.443 | 40.8 | -0.0573 | 4.53 | 1.026 | 90 | 8.02 | 3.92 |
| 437.29 | 0.981 | 3.07 | 0.0975 | 0.0974 | 4.39 | -0.258 | -- | -0.0763 | 10.5 | 0.0006583 | 62 | 8.62 | 4.37 |
| 411.95 | 0.945 | 3.15 | 0.373 | 0.0738 | 18.5 | -- | 40.5 | -0.0596 | 8.87 | 0.9908 | 90 | 8.08 | 3.92 |
| 412.13 | 0.946 | 3.06 | 0.155 | 0.0695 | 5.14 | -- | -- | -0.0558 | 8.72 | 0.822 | 58 | 8.57 | 4.36 |
| 412.25 | 0.946 | 3.15 | 0.37 | -- | 18.5 | -- | 40.3 | -0.0584 | -- | 0.9837 | 89 | 8.05 | 3.93 |
| 456.21 | 1 | 3.07 | 0.0469 | 0.119 | -- | -0.439 | -- | -0.0935 | 11.3 | -- | -- | -- | -- |
| 456.88 | 1 | 3.07 | 0.0272 | 0.134 | -- | -- | -- | -0.0965 | 9.71 | -- | -- | -- | -- |
| 412.41 | 0.946 | 3.07 | 0.156 | -- | 5.16 | -- | -- | -0.0549 | -- | 0.7774 | 59 | 8.56 | 4.36 |
| 412.76 | 0.946 | 3.07 | -- | 0.0707 | 5.08 | -- | -- | -0.0733 | 8.56 | 0.8009 | 58 | 8.57 | 4.35 |
| 457.95 | 1 | 3.08 | 0.0259 | -- | -- | -- | -- | -0.0963 | -- | -- | -- | -- | -- |
| 456.9 | 1 | 3.07 | -- | 0.134 | -- | -- | -- | -0.0995 | 9.69 | -- | -- | -- | -- |
| 413.04 | 0.947 | 3.07 | -- | -- | 5.1 | -- | -- | -0.0726 | -- | 0.7493 | 60 | 8.56 | 4.34 |
| 457.97 | 0.999 | 3.08 | -- | -- | -- | -- | -- | -0.0992 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 411.89 | radiation | 1 | 90 | < th | dose independent | rect. | 8 | 4 |
| 2 | 411.89 | radiation | 1 | 90 | < th | dose dependent | rect. | 8 | 4 |
| 5 | 413.65 | radiation | 1 | 270 | < th | dose independent | rect. | 9 | 1 |
| 6 | 413.65 | radiation | 1 | 270 | < th | dose dependent | rect. | 9 | 1 |
| 13 | 423.91 | humidity | 70 | 10 | < th | dose independent | rect. | 7 | 1 |
| 73 | 423.91 | humidity | 70 | 10 | < th | dose dependent | rect. | 7 | 1 |
| 133 | 426.59 | radiation | 20 | 10 | > th | dose dependent | rect. | 16 | 16 |
| 134 | 426.82 | humidity | 80 | 90 | < th | dose dependent | rect. | 20 | 1 |
| 135 | 426.86 | radiation | 30 | 30 | > th | dose independent | rect. | 7 | 1 |
| 188 | 427.49 | radiation | 20 | 10 | > th | dose dependent | rect. | 7 | 1 |
| 218 | 427.52 | humidity | 70 | 10 | < th | dose dependent | rect. | 16 | 17 |
| 390 | 428.84 | humidity | 70 | 30 | < th | dose dependent | rect. | 18 | 15 |
| 436 | 429.19 | humidity | 70 | 90 | < th | dose independent | rect. | 18 | 14 |
| 458 | 429.26 | radiation | 30 | 10 | < th | dose independent | sin | 11 | NA |
| 519 | 429.76 | humidity | 80 | 90 | < th | dose independent | rect. | 20 | 1 |
| 566 | 430.49 | humidity | 90 | 90 | < th | dose dependent | rect. | 20 | 3 |
| 631 | 432.25 | humidity | 70 | 10 | < th | dose independent | rect. | 16 | 17 |
| 653 | 433.88 | radiation | 20 | 10 | > th | dose independent | sin | 11 | NA |
| 701 | 434.78 | wind | 5 | 270 | < th | dose dependent | rect. | 5 | 6 |
| 747 | 435.40 | humidity | 90 | 10 | < th | dose independent | rect. | 21 | 1 |
| 762 | 436.13 | wind | 3 | 270 | < th | dose independent | rect. | 5 | 6 |
| 764 | 436.19 | humidity | 90 | 1440 | < th | dose dependent | rect. | 23 | 9 |
| 765 | 436.25 | humidity | 90 | 1440 | < th | dose independent | rect. | 1 | 3 |
| 770 | 436.42 | humidity | 90 | 90 | < th | dose dependent | rect. | 20 | 5 |
| 773 | 436.45 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 7 | 1 |
| 779 | 436.60 | radiation | 1 | 10 | < th | dose independent | rect. | 7 | 5 |
| 781 | 436.60 | radiation | 1 | 10 | < th | dose dependent | rect. | 7 | 5 |
| 786 | 436.77 | humidity | 90 | 1440 | < th | dose independent | rect. | 24 | 6 |
| 814 | 437.10 | wind | 3 | 270 | < th | dose independent | rect. | 6 | 4 |
| 820 | 437.23 | temperature | 20 | 270 | < th | dose independent | rect. | 16 | 7 |
| 821 | 437.26 | humidity | 70 | 1440 | > th | dose independent | rect. | 24 | 7 |
| 826 | 437.35 | wind | 3 | 270 | < th | dose dependent | rect. | 6 | 3 |
| 848 | 437.63 | temperature | 20 | 270 | < th | dose independent | rect. | 9 | 14 |
| 849 | 437.64 | humidity | 80 | 1440 | > th | dose independent | rect. | 22 | 10 |
| 854 | 437.67 | humidity | 70 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 891 | 438.07 | radiation | 1 | 10 | < th | dose independent | rect. | 11 | 1 |
| 908 | 438.07 | radiation | 1 | 10 | < th | dose dependent | rect. | 11 | 1 |
| 930 | 438.16 | radiation | 1 | 1440 | < th | dose dependent | rect. | 21 | 8 |
| 940 | 438.38 | temperature | 20 | 270 | > th | dose independent | rect. | 11 | 16 |
| 973 | 438.89 | temperature | 25 | 10 | > th | dose dependent | rect. | 21 | 10 |
| 979 | 438.98 | humidity | 70 | 720 | < th | dose independent | rect. | 7 | 1 |