Os01g0372500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Leucoanthocyanidin dioxygenase (EC 1.14.11.19) (LDOX) (Leucocyanidin oxygenase) (Leucoanthocyanidin hydroxylase).
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Os01g0372500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Leucoanthocyanidin dioxygenase (EC 1.14.11.19) (LDOX) (Leucocyanidin oxygenase) (Leucoanthocyanidin hydroxylase).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 69.74 | 0.392 | 3.21 | 0.265 | 0.115 | 4.99 | 0.0266 | 17.1 | 0.0255 | 8.45 | 995 | 5605 | -- | -- |
| 76.8 | 0.411 | 3.17 | 0.0883 | 0.124 | 0.427 | 0.069 | -- | 0.00609 | 8.36 | 995.3 | 5588 | -- | -- |
| 69.73 | 0.389 | 3.21 | 0.275 | 0.119 | 5.28 | -- | 18 | 0.0236 | 8.22 | 995 | 5697 | -- | -- |
| 73.41 | 0.399 | 3.16 | 0.0839 | 0.112 | 0.591 | -- | -- | 0.0391 | 8.35 | 998.3 | 5968 | -- | -- |
| 70.43 | 0.391 | 3.22 | 0.31 | -- | 5.81 | -- | 19.8 | 0.0302 | -- | 995 | 6089 | -- | -- |
| 77.11 | 0.412 | 3.17 | 0.0934 | 0.119 | -- | 0.066 | -- | 0.00427 | 8.59 | -- | -- | -- | -- |
| 77.12 | 0.411 | 3.17 | 0.0953 | 0.119 | -- | -- | -- | 0.00413 | 8.41 | -- | -- | -- | -- |
| 74.11 | 0.401 | 3.16 | 0.0757 | -- | 0.601 | -- | -- | 0.0369 | -- | 998.3 | 5981 | -- | -- |
| 73.55 | 0.399 | 3.16 | -- | 0.114 | 0.594 | -- | -- | 0.0281 | 8.22 | 998.3 | 5984 | -- | -- |
| 77.91 | 0.412 | 3.17 | 0.0959 | -- | -- | -- | -- | 0.00534 | -- | -- | -- | -- | -- |
| 77.36 | 0.411 | 3.17 | -- | 0.12 | -- | -- | -- | -0.00648 | 8.35 | -- | -- | -- | -- |
| 74.26 | 0.401 | 3.17 | -- | -- | 0.602 | -- | -- | 0.0293 | -- | 998.3 | 5984 | -- | -- |
| 78.15 | 0.413 | 3.17 | -- | -- | -- | -- | -- | -0.0053 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 64.42 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 23 | 1 |
| 2 | 67.02 | atmosphere | 995.0 | 4320 | < th | dose independent | rect. | 14 | 1 |
| 11 | 67.02 | atmosphere | 995.0 | 4320 | < th | dose dependent | rect. | 15 | 1 |
| 21 | 67.05 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 12 | 5 |
| 55 | 67.34 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 11 | 2 |
| 56 | 67.34 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 8 | 9 |
| 113 | 67.65 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 4 | 9 |
| 115 | 67.68 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 146 | 68.12 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 12 | 9 |
| 199 | 68.54 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 8 | 13 |
| 260 | 70.03 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 19 | 18 |
| 291 | 70.88 | atmosphere | 995.0 | 4320 | > th | dose independent | sin | 7 | NA |
| 293 | 70.89 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 297 | 70.90 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 298 | 70.90 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 302 | 71.01 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 23 | 3 |
| 304 | 71.08 | atmosphere | 995.0 | 4320 | < th | dose dependent | sin | 5 | NA |
| 306 | 71.12 | wind | 7.0 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 308 | 71.15 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 313 | 71.37 | atmosphere | 995.0 | 4320 | < th | dose independent | sin | 6 | NA |
| 342 | 71.77 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 19 | 7 |
| 347 | 71.85 | humidity | 90.0 | 720 | < th | dose independent | rect. | 3 | 1 |
| 378 | 72.19 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 23 | 23 |
| 394 | 72.36 | wind | 7.0 | 4320 | < th | dose independent | rect. | 5 | 2 |
| 397 | 72.40 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 11 | 2 |
| 401 | 72.45 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 10 | 2 |
| 408 | 72.49 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 1 | 12 |
| 429 | 72.55 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 473 | 72.67 | wind | 7.0 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 518 | 72.86 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 2 | 7 |
| 554 | 72.94 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 20 | 13 |
| 560 | 72.97 | atmosphere | 1000.0 | 30 | < th | dose independent | sin | 3 | NA |
| 624 | 73.01 | atmosphere | 1000.0 | 10 | > th | dose independent | sin | 3 | NA |
| 635 | 73.02 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 11 | 23 |
| 650 | 73.08 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 8 | 5 |
| 666 | 73.11 | humidity | 90.0 | 720 | > th | dose independent | rect. | 3 | 1 |
| 705 | 73.16 | atmosphere | 1000.0 | 30 | < th | dose independent | rect. | 24 | 22 |
| 846 | 73.20 | atmosphere | 995.0 | 4320 | < th | dose dependent | no | NA | NA |
| 897 | 73.22 | atmosphere | 1000.0 | 30 | < th | dose independent | rect. | 1 | 17 |
| 935 | 73.25 | wind | 5.0 | 14400 | < th | dose independent | rect. | 11 | 4 |
| 960 | 73.30 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 3 | 12 |
| 966 | 73.30 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 17 | 21 |
| 988 | 73.33 | wind | 5.0 | 14400 | > th | dose independent | rect. | 11 | 4 |