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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0372100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.5 (0.0568) R2 : 0.602
β1 : 5.3 (0.297) R2dD : 0.976 R2D : -0.393
β2 : 1.66 (0.115) R2dC : 0.183 R2C : 9.32e-05
β3 : -2.28 (0.171) R2dE : 0.204 R2E : -0.336
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 7.19 (0.878) R2dD*E : 0.205 R2D*E : -0.534
γ1 : 1.77 (0.12) R2dN8 : 0.415 R2N8 : -0.149
σ : 0.824
deviance : 313.38
__
_____
C
peak time of C : 5.85
E
wheather : temperature
threshold : 18.59
memory length : 3894
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
313.2 0.832 4.5 5.3 1.66 -2.28 0.299 7.23 1.78 5.8 18.76 3880 -- --
348.25 0.869 4.64 4.64 1.64 -2.97 0.956 -- 1.92 5.73 12.51 18116 -- --
313.38 0.824 4.5 5.3 1.66 -2.28 -- 7.19 1.77 5.85 18.59 3894 -- --
345.47 0.866 4.61 4.52 1.66 -2.88 -- -- 1.97 6.06 6.704 15426 -- --
448.59 0.986 4.5 5.51 -- -2.33 -- 7.96 1.87 -- 19.66 3500 -- --
469.64 1.02 4.88 2.37 1.64 -- 0.0503 -- 0.772 6.28 -- -- -- --
469.64 1.01 4.88 2.37 1.64 -- -- -- 0.772 6.28 -- -- -- --
482.19 1.02 4.64 4.56 -- -2.92 -- -- 2 -- 4.582 15020 -- --
584.01 1.13 4.91 -- 1.21 -1.34 -- -- 0.702 6.7 19.64 296 -- --
609.18 1.15 4.91 2.42 -- -- -- -- 0.808 -- -- -- -- --
617.91 1.16 4.94 -- 1.67 -- -- -- 0.508 6.21 -- -- -- --
629.55 1.17 4.94 -- -- -1.99 -- -- 0.699 -- 24.6 341 -- --
763.14 1.29 4.97 -- -- -- -- -- 0.54 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 295.69 humidity 80 43200 > th dose independent rect. 24 1
2 296.08 humidity 80 43200 < th dose independent rect. 23 1
3 296.94 atmosphere 995 43200 > th dose independent rect. 8 11
13 297.37 atmosphere 995 43200 > th dose independent rect. 11 8
19 297.42 humidity 80 43200 > th dose independent rect. 23 4
21 297.44 atmosphere 995 43200 < th dose independent rect. 8 11
34 297.51 atmosphere 995 43200 < th dose independent rect. 11 8
64 298.19 atmosphere 995 43200 < th dose independent rect. 13 4
72 298.49 wind 3 43200 < th dose dependent rect. 8 1
115 300.14 atmosphere 995 43200 < th dose dependent rect. 15 1
119 300.33 atmosphere 995 43200 < th dose dependent rect. 14 5
122 300.34 atmosphere 995 43200 < th dose independent sin 22 NA
123 300.37 atmosphere 995 43200 > th dose independent sin 22 NA
143 301.11 radiation 1 14400 > th dose independent rect. 18 11
148 301.27 humidity 80 43200 < th dose dependent rect. 22 1
174 302.79 humidity 80 43200 > th dose independent rect. 21 7
180 303.04 humidity 80 43200 > th dose independent rect. 21 10
200 303.96 temperature 20 14400 < th dose independent rect. 21 1
202 304.08 humidity 80 43200 < th dose independent rect. 21 6
217 304.56 humidity 90 14400 > th dose dependent rect. 21 3
220 304.71 humidity 80 43200 < th dose independent rect. 21 11
243 305.50 humidity 80 43200 < th dose independent rect. 23 8
246 305.60 wind 1 43200 < th dose independent rect. 24 2
255 305.94 wind 3 43200 > th dose independent rect. 20 2
266 306.51 humidity 90 14400 > th dose dependent rect. 22 1
267 306.56 wind 3 43200 > th dose independent rect. 6 9
276 306.91 wind 3 43200 < th dose independent rect. 20 2
280 306.99 wind 1 43200 > th dose independent rect. 24 2
283 307.02 radiation 1 43200 > th dose independent rect. 18 1
295 307.11 temperature 20 14400 > th dose independent rect. 21 1
299 307.28 temperature 20 14400 > th dose independent rect. 18 4
338 308.35 wind 1 43200 > th dose dependent rect. 6 1
353 308.77 humidity 90 14400 < th dose independent rect. 18 1
354 308.77 wind 3 43200 < th dose independent rect. 6 4
365 308.91 wind 3 43200 < th dose independent rect. 6 8
366 308.96 wind 1 43200 > th dose dependent rect. 6 10
367 309.08 humidity 90 14400 > th dose dependent rect. 18 7
370 309.18 radiation 10 43200 < th dose dependent rect. 9 1
378 309.30 wind 3 43200 < th dose dependent rect. 6 6
389 309.67 humidity 90 14400 > th dose dependent rect. 17 9
393 309.72 wind 3 43200 < th dose independent rect. 8 2
395 309.78 wind 3 43200 > th dose independent rect. 6 4
396 309.79 humidity 80 43200 < th dose dependent rect. 21 11
399 309.94 wind 9 43200 > th dose independent rect. 18 21
403 310.13 wind 1 43200 < th dose dependent rect. 1 1
409 310.21 wind 3 43200 > th dose independent rect. 3 13
421 310.51 wind 9 43200 < th dose independent rect. 18 21
429 310.72 wind 9 43200 < th dose dependent rect. 6 10
447 311.12 wind 9 43200 < th dose independent rect. 20 19
451 311.25 humidity 90 14400 > th dose dependent sin 15 NA
453 311.28 wind 5 43200 < th dose dependent rect. 6 9
469 311.55 wind 7 43200 > th dose independent rect. 6 1
478 311.85 wind 3 43200 < th dose independent rect. 6 6
484 311.96 wind 3 43200 > th dose independent sin 2 NA
487 311.97 wind 9 43200 < th dose dependent rect. 6 1
488 311.98 wind 3 43200 > th dose independent rect. 20 20
499 312.19 wind 1 43200 > th dose dependent rect. 5 18
500 312.20 wind 3 43200 > th dose independent rect. 8 2
501 312.27 wind 1 43200 > th dose dependent rect. 3 20
503 312.29 wind 1 43200 > th dose dependent sin 1 NA
518 312.46 wind 1 43200 > th dose dependent rect. 19 22
520 312.48 wind 9 43200 < th dose independent rect. 2 13
534 312.61 wind 3 43200 > th dose independent rect. 6 1
535 312.61 wind 9 43200 < th dose independent rect. 24 15
536 312.62 humidity 90 14400 > th dose independent rect. 18 1
540 312.65 humidity 90 43200 > th dose dependent rect. 6 1
564 312.88 temperature 25 14400 < th dose independent rect. 15 1
569 312.95 wind 3 43200 > th dose independent rect. 3 20
587 313.13 wind 7 43200 > th dose dependent rect. 5 10
588 313.13 wind 9 43200 < th dose dependent rect. 19 22
618 313.44 wind 9 43200 < th dose dependent rect. 3 20
635 313.58 wind 9 43200 < th dose independent rect. 6 9
639 313.63 wind 9 43200 < th dose dependent rect. 5 18
651 313.74 humidity 90 14400 > th dose independent rect. 17 10
666 313.82 wind 9 43200 > th dose independent rect. 2 13
673 313.89 wind 9 43200 < th dose dependent sin 1 NA
674 313.89 wind 1 43200 > th dose dependent rect. 14 22
696 314.05 wind 3 43200 < th dose independent sin 3 NA
722 314.12 wind 9 43200 > th dose independent rect. 24 15
725 314.12 wind 1 43200 > th dose dependent rect. 11 23
746 314.26 wind 3 43200 < th dose independent rect. 6 1
757 314.32 temperature 25 14400 > th dose independent rect. 14 2
766 314.36 wind 3 43200 < th dose independent rect. 20 19
788 314.48 wind 9 43200 < th dose dependent rect. 14 22
801 314.53 wind 1 43200 > th dose dependent no NA NA
803 314.55 wind 7 43200 > th dose dependent rect. 2 14
808 314.56 temperature 20 1440 > th dose dependent rect. 7 2
820 314.60 wind 9 43200 < th dose dependent rect. 5 23
827 314.63 wind 9 43200 > th dose independent rect. 6 9
844 314.69 wind 9 43200 < th dose dependent rect. 11 23
886 314.84 humidity 90 14400 < th dose independent rect. 17 10
897 314.87 temperature 20 4320 > th dose dependent rect. 7 13
899 314.88 temperature 20 4320 > th dose dependent rect. 6 10
926 314.99 humidity 90 14400 < th dose independent rect. 17 8
933 315.02 wind 3 43200 < th dose independent rect. 18 16
938 315.03 temperature 20 4320 > th dose dependent sin 22 NA
944 315.05 humidity 90 14400 > th dose independent sin 15 NA
973 315.14 wind 1 43200 > th dose dependent rect. 14 20
979 315.17 wind 3 43200 > th dose independent rect. 18 16
999 315.22 temperature 20 4320 > th dose dependent rect. 13 1