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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0371400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Glutathione S-transferase, N-terminal domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.93 (0.038) R2 : 0.168
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 5.49 (0.589) R2dE : 0.159 R2E : 0.162
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.131 (0.0802) R2dN8 : 0.00635 R2N8 : 0.00863
σ : 0.714
deviance : 234.95
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C
peak time of C : --
E
wheather : humidity
threshold : 71.06
memory length : 128
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 19.5
open length of G : 12.7

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
241.52 0.73 2.95 -0.516 0.0719 3.69 -0.843 -18.7 -0.181 7.28 70 89 19 12
234.58 0.713 2.97 -0.219 0.0862 4.21 -1.41 -- -0.293 7.26 71 128 19.5 12.8
242.76 0.726 2.95 -0.594 0.0735 4.22 -- -23.6 -0.174 4.91 70.85 101 19.1 11.9
233.4 0.712 2.93 -0.222 0.00559 5.21 -- -- -0.182 6.36 71.23 127 19.5 12.7
238.3 0.719 2.95 -0.348 -- 4.19 -- -10.5 -0.207 -- 70.64 105 19.6 11.2
271.35 0.772 2.95 -0.326 0.025 -- -1.36 -- -0.223 7.32 -- -- -- --
276.19 0.778 2.95 -0.358 0.0564 -- -- -- -0.222 3.18 -- -- -- --
233.18 0.711 2.93 -0.261 -- 5.33 -- -- -0.16 -- 71.02 128 19.5 12.7
234.82 0.714 2.93 -- 0.0569 5.46 -- -- -0.13 3.36 71.1 127 19.5 12.7
276.37 0.777 2.95 -0.356 -- -- -- -- -0.22 -- -- -- -- --
279.58 0.782 2.94 -- 0.0493 -- -- -- -0.182 3.17 -- -- -- --
234.95 0.714 2.93 -- -- 5.49 -- -- -0.131 -- 71.06 128 19.5 12.7
279.71 0.781 2.94 -- -- -- -- -- -0.181 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 242.32 humidity 70 90 < th dose independent rect. 19 12
2 243.45 temperature 30 270 > th dose dependent rect. 8 1
17 243.51 humidity 70 90 < th dose dependent rect. 19 12
18 243.59 temperature 30 270 > th dose independent rect. 8 1
104 251.52 atmosphere 1000 270 < th dose independent rect. 8 1
108 252.56 humidity 80 30 < th dose dependent rect. 7 2
110 252.57 humidity 80 10 < th dose dependent rect. 23 10
130 252.91 atmosphere 1000 10 < th dose independent rect. 9 4
155 254.14 radiation 20 30 > th dose dependent rect. 7 2
170 254.18 wind 3 90 < th dose dependent rect. 16 5
174 254.30 atmosphere 1000 90 < th dose dependent rect. 9 3
179 254.40 radiation 20 30 > th dose independent rect. 7 2
216 254.49 wind 3 90 < th dose independent rect. 16 4
367 254.66 humidity 70 10 < th dose independent rect. 7 1
544 254.83 atmosphere 1000 10 < th dose dependent rect. 9 4
848 256.26 atmosphere 1000 270 < th dose dependent rect. 8 1
850 256.30 temperature 30 90 > th dose dependent sin 9 NA
853 256.32 temperature 30 90 > th dose independent sin 9 NA
920 256.92 temperature 25 30 > th dose independent rect. 19 1
926 257.08 temperature 30 90 < th dose independent sin 9 NA
945 257.15 radiation 30 30 < th dose independent sin 10 NA
950 257.22 atmosphere 1000 10 < th dose independent rect. 21 17
953 257.25 atmosphere 1005 90 > th dose dependent rect. 7 1
976 257.38 atmosphere 1000 10 < th dose independent rect. 9 18
980 257.44 humidity 70 90 < th dose independent rect. 19 1