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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0370900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Glutathione S-transferase, N-terminal domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.34 (0.0563) R2 : 0.476
β1 : 0.687 (0.206) R2dD : 0.0135 R2D : 0.0135
β2 : 1.21 (0.211) R2dC : 0.0807 R2C : 0.26
β3 : 2 (0.227) R2dE : 0.191 R2E : 0.375
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.241 (0.12) R2dN8 : 0.00624 R2N8 : 0.0044
σ : 1.05
deviance : 505.23
__
_____
C
peak time of C : 7.06
E
wheather : wind
threshold : 4.25
memory length : 104
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 2.02
open length of G : 7.32

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
503.22 1.05 4.34 0.731 1.22 2.01 -1.08 0.382 0.244 6.99 4.185 104 2.02 7.27
503.3 1.04 4.35 0.702 1.21 2.03 -0.874 -- 0.242 7.01 4.138 104 2.02 7.32
504.99 1.05 4.36 0.644 1.17 2.04 -- -0.281 0.215 7.1 4.364 102 2.03 7.33
505.23 1.05 4.34 0.687 1.21 2 -- -- 0.241 7.06 4.25 104 2.02 7.32
529.18 1.07 4.39 0.672 -- 2.66 -- -0.46 0.174 -- 6.395 104 1.85 7.76
579.88 1.13 4.3 0.83 2.63 -- -0.413 -- 0.284 6.43 -- -- -- --
580.31 1.13 4.3 0.825 2.62 -- -- -- 0.286 6.44 -- -- -- --
529.67 1.07 4.4 0.698 -- 2.66 -- -- 0.181 -- 6.538 105 1.73 7.88
517.78 1.06 4.35 -- 1.2 2.05 -- -- 0.208 7 4.219 104 2.02 7.36
938.06 1.43 4.35 0.892 -- -- -- -- 0.341 -- -- -- -- --
598.24 1.14 4.32 -- 2.63 -- -- -- 0.194 6.42 -- -- -- --
540.96 1.08 4.41 -- -- 2.69 -- -- 0.111 -- 6.145 105 1.68 7.93
959.04 1.45 4.38 -- -- -- -- -- 0.242 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 505.43 wind 5.0 90 < th dose dependent rect. 2 7
2 506.56 wind 5.0 270 < th dose independent rect. 1 6
4 506.83 wind 7.0 270 < th dose dependent rect. 2 4
15 508.35 precipitation 0.1 270 < th dose independent rect. 2 16
16 508.35 precipitation 0.1 270 < th dose dependent rect. 2 16
20 509.47 radiation 1.0 270 < th dose independent rect. 5 21
28 510.55 precipitation 0.1 270 < th dose independent rect. 1 6
29 510.55 precipitation 0.1 270 < th dose dependent rect. 1 6
30 510.88 radiation 1.0 270 < th dose dependent rect. 5 21
31 511.06 precipitation 0.1 270 < th dose independent rect. 2 4
32 511.06 precipitation 0.1 270 < th dose dependent rect. 2 4
38 512.11 humidity 50.0 270 > th dose independent rect. 7 18
41 512.48 humidity 50.0 270 > th dose independent rect. 6 20
45 512.85 humidity 50.0 270 > th dose dependent rect. 7 18
55 513.73 radiation 1.0 270 < th dose independent rect. 18 8
59 513.92 temperature 15.0 270 > th dose independent rect. 2 16
62 514.02 radiation 10.0 270 < th dose dependent rect. 18 8
65 514.14 precipitation 0.1 270 < th dose independent rect. 18 8
66 514.14 precipitation 0.1 270 < th dose dependent rect. 18 8
67 514.15 atmosphere 995.0 270 > th dose independent rect. 18 8
72 514.26 wind 9.0 270 < th dose independent rect. 18 8
73 514.27 humidity 60.0 270 > th dose independent rect. 18 8
74 514.33 temperature 10.0 270 > th dose independent rect. 18 8
80 514.33 atmosphere 1015.0 270 < th dose independent rect. 2 16
83 514.47 temperature 10.0 270 > th dose dependent rect. 2 5
85 514.51 temperature 10.0 270 > th dose independent rect. 1 6
87 514.51 temperature 30.0 270 < th dose independent rect. 1 6
88 514.51 humidity 50.0 270 > th dose independent rect. 1 6
90 514.51 atmosphere 995.0 270 > th dose independent rect. 1 6
91 514.51 atmosphere 1015.0 270 < th dose independent rect. 1 6
92 514.51 radiation 40.0 270 < th dose independent rect. 1 6
93 514.51 precipitation 0.1 10 < th dose independent rect. 2 6
94 514.51 temperature 10.0 270 > th dose independent rect. 7 18
95 514.51 precipitation 0.1 10 < th dose dependent rect. 2 6
104 514.76 wind 9.0 270 < th dose independent rect. 2 16
112 515.02 wind 9.0 270 < th dose independent rect. 7 18
116 515.13 temperature 30.0 270 < th dose independent rect. 18 8
120 515.28 atmosphere 1010.0 270 < th dose independent rect. 2 4
126 515.46 temperature 10.0 270 > th dose independent rect. 2 4
128 515.46 temperature 30.0 270 < th dose independent rect. 2 4
129 515.46 humidity 50.0 270 > th dose independent rect. 2 4
132 515.46 atmosphere 995.0 270 > th dose independent rect. 2 4
134 515.46 radiation 20.0 270 < th dose independent rect. 2 4
137 515.46 temperature 10.0 270 > th dose independent rect. 6 20
152 515.83 radiation 40.0 270 < th dose dependent rect. 1 6
154 515.91 wind 9.0 270 < th dose independent rect. 6 20
185 516.35 radiation 40.0 270 < th dose dependent rect. 2 4
189 516.41 precipitation 0.1 270 < th dose independent rect. 15 15
190 516.41 precipitation 0.1 270 < th dose dependent rect. 15 15
200 516.65 precipitation 0.1 270 < th dose independent rect. 7 18
201 516.65 precipitation 0.1 270 < th dose dependent rect. 7 18
220 517.07 humidity 50.0 270 > th dose dependent rect. 2 4
275 518.06 precipitation 0.1 270 < th dose independent rect. 6 20
276 518.06 precipitation 0.1 270 < th dose dependent rect. 6 20
289 518.57 humidity 50.0 270 > th dose dependent rect. 1 6
292 518.78 precipitation 0.1 10 < th dose independent rect. 2 18
293 518.78 precipitation 0.1 10 < th dose dependent rect. 2 18
304 518.92 humidity 50.0 270 > th dose independent rect. 6 8
310 519.13 humidity 70.0 270 > th dose independent rect. 7 19
331 519.28 atmosphere 995.0 270 > th dose independent rect. 7 18
340 519.43 atmosphere 995.0 270 > th dose independent rect. 2 16
341 519.48 atmosphere 995.0 270 > th dose independent rect. 6 9
343 519.49 humidity 50.0 270 > th dose dependent rect. 18 8
348 519.62 humidity 50.0 270 > th dose independent rect. 20 16
350 519.67 temperature 10.0 270 > th dose independent rect. 6 8
352 519.67 atmosphere 1015.0 270 < th dose independent rect. 6 8
353 519.67 temperature 10.0 270 > th dose independent rect. 14 16
355 519.69 radiation 1.0 90 > th dose independent rect. 17 14
356 519.70 wind 1.0 270 > th dose independent rect. 6 7
358 519.73 radiation 10.0 270 < th dose dependent rect. 15 11
393 520.38 radiation 40.0 270 < th dose independent rect. 15 15
395 520.39 temperature 10.0 10 > th dose dependent rect. 2 6
398 520.44 precipitation 0.1 270 < th dose independent rect. 6 8
399 520.44 precipitation 0.1 270 < th dose dependent rect. 6 8
425 520.61 wind 9.0 270 < th dose independent rect. 14 16
438 520.75 wind 9.0 270 < th dose independent rect. 6 8
449 520.92 atmosphere 995.0 270 > th dose independent rect. 6 20
497 521.35 wind 1.0 270 > th dose independent rect. 11 9
513 521.49 precipitation 0.1 10 < th dose independent rect. 8 18
515 521.49 precipitation 0.1 10 < th dose dependent rect. 8 18
520 521.51 temperature 10.0 10 > th dose independent rect. 2 6
524 521.51 temperature 30.0 10 < th dose independent rect. 2 6
526 521.51 humidity 50.0 10 > th dose independent rect. 2 6
530 521.51 atmosphere 995.0 10 > th dose independent rect. 2 6
532 521.51 atmosphere 1015.0 10 < th dose independent rect. 2 6
534 521.51 radiation 1.0 30 < th dose independent rect. 20 16
536 521.51 temperature 10.0 10 > th dose independent rect. 8 18
545 521.55 radiation 1.0 30 < th dose independent rect. 20 12
571 521.63 wind 9.0 1440 < th dose independent rect. 3 6
572 521.63 temperature 10.0 1440 > th dose independent rect. 3 6
575 521.63 humidity 50.0 1440 > th dose independent rect. 3 6
577 521.63 atmosphere 995.0 1440 > th dose independent rect. 3 6
578 521.63 temperature 10.0 1440 > th dose independent rect. 9 18
595 521.86 precipitation 0.1 270 < th dose independent rect. 11 9
596 521.86 precipitation 0.1 270 < th dose dependent rect. 11 9
609 521.90 temperature 15.0 270 > th dose independent rect. 11 9
614 521.97 precipitation 0.1 10 < th dose independent rect. 17 15
616 521.97 precipitation 0.1 10 < th dose dependent rect. 17 15
652 522.32 wind 1.0 270 > th dose independent rect. 7 17
673 522.53 atmosphere 1015.0 270 < th dose dependent rect. 2 4
679 522.62 wind 9.0 10 < th dose independent rect. 8 18
683 522.70 atmosphere 1015.0 270 < th dose independent rect. 11 9
684 522.70 temperature 10.0 270 > th dose independent rect. 20 15
685 522.70 atmosphere 995.0 270 > th dose independent rect. 20 15
705 522.86 humidity 50.0 30 > th dose dependent rect. 20 6
707 522.88 atmosphere 995.0 30 > th dose independent rect. 8 18
723 522.97 wind 9.0 90 < th dose dependent rect. 2 17
730 523.00 radiation 1.0 30 < th dose dependent rect. 20 16
734 523.01 radiation 1.0 10 < th dose independent rect. 20 10
739 523.04 radiation 1.0 30 < th dose dependent rect. 20 12
744 523.09 wind 9.0 270 < th dose independent rect. 20 15
760 523.30 wind 1.0 270 > th dose independent rect. 8 1
768 523.36 wind 1.0 90 > th dose independent rect. 20 16
793 523.66 wind 9.0 270 < th dose independent rect. 11 9
807 523.85 radiation 40.0 14400 < th dose independent rect. 16 5
828 524.16 radiation 1.0 10 < th dose dependent rect. 20 10
857 524.26 precipitation 0.1 30 < th dose independent rect. 20 6
859 524.26 precipitation 0.1 30 < th dose dependent rect. 20 6
938 524.88 radiation 1.0 1440 < th dose dependent rect. 21 6
946 524.94 wind 7.0 30 < th dose independent rect. 20 6
989 525.12 temperature 10.0 1440 > th dose independent rect. 21 6
992 525.12 temperature 30.0 1440 < th dose independent rect. 21 6
996 525.12 humidity 50.0 1440 > th dose independent rect. 21 6